DreINT0176196 @ danRer10

Intron Retention

Gene

ENSDARG00000102414 | wu:fd14a01

Description

wu:fd14a01 [Source:ZFIN;Acc:ZDB-GENE-030131-5336]

Coordinates

chr22:284556-285154:-

Coord C1 exon

chr22:285030-285154

Coord A exon

chr22:284865-285029

Coord C2 exon

chr22:284556-284864

Length

165 bp

Sequences

Splice sites

5' ss Seq

GAGGTACTA

5' ss Score

6.36

3' ss Seq

TGCTTTATTTTCTCCTGTAGGGC

3' ss Score

11.43

Exon sequences

Seq C1 exon

AGGAGATTTCTGACCTCACTGAGCAGCTTGGAGAGACTGGAAAGAGCATTCATGAGTTAGAGAAAGCCAAGAAGACTGTGGAGTCTGAGAAAGTAGAGATCCAGACTGCACTTGAAGAAGCCGAG

Seq A exon

GTACTATTTCTTTACTACTTCGTAAAAGTATGATTTGAAACATTGTTTTGGATATAATTCAAAACTTTGATAAATTACAAATATTTCATACTCGTATAAATGTACAGATTTGAGATAGCATTAACAAAAACTTAAAAATTCATTTTGCTTTATTTTCTCCTGTAG

Seq C2 exon

GGCACCCTGGAGCATGAGGAGTCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAGGTGAAGAGTGAGATTGACAGGAAGCTTGCTGAGAAGGATGAAGAGATAGAACAGATCAAGAGGAACAGCCAAAGAGTGCTTGATGCCATGCAGAGCACTCTGGACTCTGAGGTCAGGAGCAGAAATGATGCCCTGAGAGTCAAAAAGAAGATGGAGGGAGATCTGAATGAGATGGAGATCCAGCTGAGTCATGCCAATCGCCAGGCTGCTGAAGCCCAGAAACAGCTCAGGAACGTTCAAGGCCAACTCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000102414:ENSDART00000098072:31

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.881 A=NA C2=0.728

Domain overlap (PFAM):

C1:

PF135141=AAA_27=FE(5.5=100),PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.5=100),PF045827=Reo_sigmaC=FE(25.8=100)

A:

NA

C2:

PF135141=AAA_27=PD(4.3=31.1),PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.5=31.1),PF045827=Reo_sigmaC=PD(1.3=1.9),PF104734=CENP-F_leu_zip=PU(25.2=35.0)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSDARP00000088845