GgaINT0127801 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:439880-440668:-
Coord C1 exon
chr18:440544-440668
Coord A exon
chr18:440189-440543
Coord C2 exon
chr18:439880-440188
Length
355 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAT
5' ss Score
2.99
3' ss Seq
TTATTTTTTTTTTTTCCTAGGCC
3' ss Score
11.06
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTCACGGAGCAGATTGCAGAGGGAGGAAAGGCAATTCATGAGTTGGAGAAAGTCAAGAAGCAGATTGAGCAGGAGAAGTCTGAAATCCAGGCTGCTCTGGAAGAAGCTGAG
Seq A exon
GTGCATTCTTTTTTCCTTAACTGTTTGCCTACCATTTGTTATGTACAATTGTTTATTTAACATAGATTAGAAACCTTAATATCATTTGTGAAATTGTATGCATGTAAGGATGACTTCCAGGCACGAGAAGCATAGGGTGTTAAACATAATTACAGTCTTCCATTATATGGCAATCCTTTTCTTTTTTGTGCAATGATGATGCTATGCAGTAGTGACTATGGGATTTTGGTTTCTTTAGTCTCTATGCCATTTAATTCATCAAATGTTTGTGTTTTTTTTTTTCATTTATTCAGTGATGTTTTATTTGTATTACTTTGTATTGTTTTGTTTTGTTTTTATTTTTTTTTTTTCCTAG
Seq C2 exon
GCCTCCCTGGAACATGAAGAGGGGAAGATCCTGCGCCTCCAACTGGAGCTCAACCAGGTCAAGTCTGAGATTGACAGGAAAATAGCAGAGAAAGATGAGGAAATTGACCAACTGAAGAGAAATCACCTCAGAATTGTGGAGTCCATGCAGAGCACTCTGGATGCTGAGATCAGGAGCAGGAATGAAGCCCTGCGGCTGAAGAAGAAGATGGAGGGAGACCTGAATGAAATGGAGATCCAGCTGAGCCATGCTAACCGTGTTGCTGCAGAGGCACAAAAGAATCTGAGAAACACACAAGGAGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.379
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.9=100),PF045827=Reo_sigmaC=PD(24.1=81.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.8=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCAGAGGGAGGAAAGGC
R:
TAGCATGGCTCAGCTGGATCT
Band lengths:
353-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]