MmuINT0103200 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67033396-67034212:+
Coord C1 exon
chr11:67033396-67033520
Coord A exon
chr11:67033521-67033903
Coord C2 exon
chr11:67033904-67034212
Length
383 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
3' ss Seq
TGGCTCTTGCTGTCCTGAAGGCA
3' ss Score
5.36
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTCACTGAACAGATTGCAGAAGGAGGGAAACGCATCCATGAACTGGAGAAAATAAAGAAGCAAATTGAGCAGGAAAAATCTGAGCTCCAGGCTGCTTTAGAGGAAGCAGAG
Seq A exon
GTAGACACACTACTGAACATTTCACAACAATTATAGAAGGAACTAGGTCCTTGCTCTGGGGTGCAAAGATTGGTGAATCAAAAACATAAAAAATGGTTCTTTATTCTCTCCAGTGAGTATGAAGATAAAGAATGAATACAAGTACCAGAAGTATATTTTAAGAGCTGTGGTAGAATCAGAAAACAAACAAATATGAGTAAGGGAAGGGTCTGTCTGTAAGAACCATCTGGCTGGAGAAAGAAAGGTGCATAGCTTCGACAATTATGCACATCACATATTTCTATAGCACAAAGACAGGAACAAGTGAGGTGGGATAATGTAACCTTCCTTGAACACTGCACAGTGCCATTCTCCTGCTAACACTGGCTCTTGCTGTCCTGAAG
Seq C2 exon
GCATCTCTGGAGCACGAGGAGGGAAAAATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTAGAGTCGTGGAGTCCATGCAGAGCACGCTGGATGCTGAGATTAGGAGCAGGAATGACGCCATCAGGCTCAAGAAGAAGATGGAGGGAGACCTGAACGAGATGGAAATCCAGCTGAACCACTCCAACCGCATGGCTGCCGAGGCCCTGAGAAACTATAGGAACACACAAGGCATCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=NA C2=0.301
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.1=100),PF057016=WEMBL=FE(11.5=100),PF115593=ADIP=FE(38.0=100),PF057916=Bacillus_HBL=FE(42.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(22.7=100),PF057016=WEMBL=FE(28.5=100),PF115593=ADIP=PD(39.8=41.7),PF057916=Bacillus_HBL=PD(29.2=27.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGAGGGAAACGCATCC
R:
GTTGGAGTGGTTCAGCTGGAT
Band lengths:
350-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: