MmuINT0103200 @ mm10
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67219894-67220710:+
Coord C1 exon
chr11:67219894-67220018
Coord A exon
chr11:67220019-67220401
Coord C2 exon
chr11:67220402-67220710
Length
383 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
3' ss Seq
TGGCTCTTGCTGTCCTGAAGGCA
3' ss Score
5.36
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTCACTGAACAGATTGCAGAAGGAGGGAAACGCATCCATGAACTGGAGAAAATAAAGAAGCAAATTGAGCAGGAAAAATCTGAGCTCCAGGCTGCTTTAGAGGAAGCAGAG
Seq A exon
GTAGACACACTACTGAACATTTCACAACAATTATAGAAGGAACTAGGTCCTTGCTCTGGGGTGCAAAGATTGGTGAATCAAAAACATAAAAAATGGTTCTTTATTCTCTCCAGTGAGTATGAAGATAAAGAATGAATACAAGTACCAGAAGTATATTTTAAGAGCTGTGGTAGAATCAGAAAACAAACAAATATGAGTAAGGGAAGGGTCTGTCTGTAAGAACCATCTGGCTGGAGAAAGAAAGGTGCATAGCTTCGACAATTATGCACATCACATATTTCTATAGCACAAAGACAGGAACAAGTGAGGTGGGATAATGTAACCTTCCTTGAACACTGCACAGTGCCATTCTCCTGCTAACACTGGCTCTTGCTGTCCTGAAG
Seq C2 exon
GCATCTCTGGAGCACGAGGAGGGAAAAATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTAGAGTCGTGGAGTCCATGCAGAGCACGCTGGATGCTGAGATTAGGAGCAGGAATGACGCCATCAGGCTCAAGAAGAAGATGGAGGGAGACCTGAACGAGATGGAAATCCAGCTGAACCACTCCAACCGCATGGCTGCCGAGGCCCTGAGAAACTATAGGAACACACAAGGCATCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328:ENSMUST00000124516:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.301
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(14.2=100),PF045827=Reo_sigmaC=PD(23.8=81.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.7=30.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGAGGGAAACGCATCC
R:
GTTGGAGTGGTTCAGCTGGAT
Band lengths:
350-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types