DreINT0176198 @ danRer10
Intron Retention
Gene
ENSDARG00000102414 | wu:fd14a01
Description
wu:fd14a01 [Source:ZFIN;Acc:ZDB-GENE-030131-5336]
Coordinates
chr22:282120-282536:-
Coord C1 exon
chr22:282333-282536
Coord A exon
chr22:282246-282332
Coord C2 exon
chr22:282120-282245
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAAGTACAG
5' ss Score
0.24
3' ss Seq
AAACTATCTATAACTTGCAGAAT
3' ss Score
6.93
Exon sequences
Seq C1 exon
GATGCCCAACTGCACCTTGATGAAGCCGTCAGAGGACAAGAGGACATGAAGGAGCAGGTGGCCATGGTGGAGCGCAGGAATAACCTGATGCAAGCAGAGATTGAGGAGCTGAGAGCCGCACTGGAGCAAACAGAGAGAGGCCGCAAAGTAGCAGAGCAGGAGCTGGTGGATGCCAGTGAGCGTGTGGGACTGCTGCACTCACAA
Seq A exon
GTACAGAAACTCATCACGAATGCATTTAAAAACACATGCAAGGCTGCTTGAAAACAGGCAGACACTAAAACTATCTATAACTTGCAG
Seq C2 exon
AATACAAGTCTTATTAACACCAAGAAGAAGCTTGAGGCTGATCTGGTCCAAATTCAAGGTGAGGTGGATGATGCAGTTCAGGAGGCCAGAAACGCAGAGGAGAAGGCCAAGAAGGCCATCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102414:ENSDART00000098072:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=NA C2=0.619
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100),PF104734=CENP-F_leu_zip=FE(46.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF104734=CENP-F_leu_zip=PD(25.9=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGAGAGAGGCCGCAAAG
R:
CGTTTCTGGCCTCCTGAACTG
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]