DreINT0177301 @ danRer10
Intron Retention
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25015399-25017494:-
Coord C1 exon
chr23:25017330-25017494
Coord A exon
chr23:25015488-25017329
Coord C2 exon
chr23:25015399-25015487
Length
1842 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATCCCATGATTCCCCATCAGCCA
3' ss Score
2.56
Exon sequences
Seq C1 exon
CCAGTCTGGACAAACATCACCGCACACACACAGGAGAGCGGCCGTTCAGCTGTGAGTTCTGTGAGCAGCGCTTTACTGAGAAAGGTCCTCTCTTACGCCACATAGCCAGCAAACACCAAGAAGGTCGACCACACTTTTGCCAGATCTGCAACAAAACATTTAAAG
Seq A exon
GTGAGACAGAAGGCTGAACAATGATGCTTTTCAGGTAGTTACAGGAATATAACAGGGTCTCCGCGGGGTCCTAAAACGTGTTAAAAGTTGATAAATCCATTCAGTGAAATTTAAGACCCTTAAAAAGTATTAAAAAGTATTAAATGCTAGTTTACATGGTATTACATTTTGTATCAGTATGCTAATGTTTGCTTGAATTTAATCTTTGAATATTGCGATGTTGTGTAGTTTTTCAGAAATCGATACAATCCTGCTAGCTTTGACACTGCTTTGCTTACTATAGTATATATATATATAGTTGAAGTCAGAATTATTAGCCCCCTTCAAATTTTTTTCTTCTTTTTTAAATATTTTTCAAATGATGTTTAACAGAGCAAGGCCATTTTCAAAGTATGTCTGATAGTATTTTTTTCTTCTGAACAAAGTCTTGTTTGTTTTATTTCAGCTATAATAAAATCAGTTTTGAATTTTTTAAACACCATTTTAGGGACAATTATTATTTTTATCGATAATCTAGAGAACAAACCATCGTTATACAATAACTTGCCTAATTACCCTAACCTTCCTAGTTAACCTCATTAACCTGGTTAAGCCTTTAAATGTCACTAAGCTGTATAGAAGTGTCTTGTAAAATATCTAGTAAAATTATTATTTACTATCATCATGACAAAGATAAAATAAATCAATTATTAGAAATTAGTTATTAAAACTATTATGGTTAGAAACGTGTTGAAAAAATCTTCTCTCCGTTAAACAGAAAACAATCAGTATTTAGTAAATATACTGTAAGTTAAAATGTCACAGATGAGGTCTTAAAATGGATGGAAAGAGTTTTAAAAAGGACTTAAAAGGTATTGAATTTCATTCTCTGTCTCCTGTATATACCCTGTTTAAGTAAATAAGTATTTTTATTTATTTTTCCATATAAAATAATCTAAAATACATCTAAAATACATTAATTTAGATAATACACAAACTCAGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATTAGGGGTTGCACCGGCTAGTCGCATAATGCTCTAGTCGTTTTTTGACCATTTACACAACTCTGGAAGAGTAATTTTATTAGCTATTGCCCTTTGCGAAGTGTAGACGCAGACATATTTTGTGAATAATCCGTGAATGTATGAAGGTATGCAAACTTCACAGCATGTGTAAACATCATCTCTGATGAACACGGTGACGTCTGATATCTAAGATGAACAGGAAAAAAATTCTCAACTTGAACAGGATTTTAATCTCGAAACTAAATAGTTTACAATTCACTTGTTTTGCACTAGCTATTTGTAATGTTGCATAGTTTTTGCAACATGTTATGAGCTATCAAATAGCATGTGTATATATTTGCTGCAAATAAATTGCAAATTGTTGCATGTTGCAAAACATTTTCATCTTTTGTTTTATTGATGACGTCAGCAGTGACTAGTCAACGTTGATAACATAAAAATCGACTTCCAAAAATCTTCCAAGTTGTTCAACCCCTAATATAAATGGCATTATAAGCATTTCATATTATGTAAAATGTGTTTAATTGTATATTTGATAAATTAAATGTTATTTTTATTTATAACTTGACATGATTAAAAACAACAAAAATAGATAAATTTAATTGATGTTTATCGTAACATAAATAATTTTTTTTATTTATTTTTAAATTCTAATGTAAATTAATATTCACAAACATAAATACTATCTTCTTTCATTTTCAAAATAAAATAAGCAATGGTTTAAAATGCCCCTTGAATAATCTTTTTCTATCCCATGATTCCCCATCAG
Seq C2 exon
CCATTGAGCAGCTCCGGGTTCATGTACGGCGTCACAAGGGCATGAGGAAATTTGAGTGCACACTTTGTGGTTACAAGTTCACCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263:ENSDART00000144903:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCTGGACAAACATCACCG
R:
CTGTCTGGTGAACTTGTAACCACA
Band lengths:
254-2096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]