GgaINT0134602 @ galGal3
Intron Retention
Gene
ENSGALG00000000637 | ZBTB48
Description
NA
Coordinates
chr21:552077-552488:-
Coord C1 exon
chr21:552324-552488
Coord A exon
chr21:552166-552323
Coord C2 exon
chr21:552077-552165
Length
158 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTTCTTCCTTTTCTTCTCAGCTG
3' ss Score
9.54
Exon sequences
Seq C1 exon
CGAGTCTGGACAAACACAACCGGACCCACACCGGGGAGCGCCCCTTCAGCTGCGAGTTCTGCGAGCAGAGATTCACAGAGAAGGGGCCCCTCCTGAGGCACATCGCCAGCCGGCACCAGGAGGGGAGGCCCCACTTCTGCCAGATCTGTGGGAAGACGTTCAAAG
Seq A exon
GTACCTTCTCCTTACAGTTGTGGCTTCGTGCCACCGTTCCAGGCCGTGCTCCTTTCCGTGTCTTGATGGCCCTTCTGCTGTAGTGCTTCACACAGCGTGGGCCTGCAGCTGCTCTGCTGGCAGGGCTGCTGTGAATGCCTTCTTCCTTTTCTTCTCAG
Seq C2 exon
CTGTTGAGCAGCTGCGTGTCCACGTCCGCAGGCACAAAGGAGTGAGGAAGTTTGAGTGCACTGAGTGTGGTTACAAGTTCACACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637:ENSGALT00000000909:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4),PF095265=DUF2387=PU(9.4=10.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=86.7),PF095265=DUF2387=FE(45.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGACAAACACAACCGG
R:
TGCCGTGTGAACTTGTAACCA
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]