MmuINT0177740 @ mm9
Intron Retention
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:151394299-151394817:-
Coord C1 exon
chr4:151394653-151394817
Coord A exon
chr4:151394388-151394652
Coord C2 exon
chr4:151394299-151394387
Length
265 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTGGTCCCTTTCCTCTGCAGCTG
3' ss Score
11.41
Exon sequences
Seq C1 exon
CCAGTTTGGACAAGCACAACCGCACCCACACGGGCGAGAGGCCTTTCAGCTGTGAATTCTGTGAGCAGCGCTTCACTGAGAAGGGCCCCCTTCTGAGGCATGTGGCCAGCCGCCATCAAGAGGGCAGGCCCCACTTCTGCCAGATCTGTGGCAAGACCTTCAAAG
Seq A exon
GTAATTAGTAGGCAAGCTGTAGGAGAATAGTGGGCCTGGCTTGTTTCCTGCCCGCCTGGGTTGGAGGGTCTACACAGAGATCAAGGGCACCGGTAGCTTCTGCATGCTCCTCAGAACCTTCAGCAGCTCCATCTTCCGTGTGCTGAGATGAGAGTGGAGCTTCTGTGACAGCGTGGGGACAGGGCACCCTGCACCTGGGCAGTGGTGACCTCAGTGCGCTGCTGTAGGGCCTGCTCCTAACGCCCGTGGTCCCTTTCCTCTGCAG
Seq C2 exon
CTGTGGAACAGTTACGAGTGCACGTCAGGCGACACAAAGGTGTGAGAAAGTTCGAGTGCACCGAGTGTGGCTACAAGTTCACGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-Zbtb48:NM_133879:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4),PF095265=DUF2387=PU(9.4=10.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=86.7),PF095265=DUF2387=FE(45.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTGGACAAGCACAACCG
R:
CTGCCGCGTGAACTTGTAGC
Band lengths:
253-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: