DreINT0177931 @ danRer10
Intron Retention
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40529550-40532695:-
Coord C1 exon
chr5:40532554-40532695
Coord A exon
chr5:40529648-40532553
Coord C2 exon
chr5:40529550-40529647
Length
2906 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGA
5' ss Score
3.11
3' ss Seq
ACAATTCGATCCATTTTTAGATG
3' ss Score
8.01
Exon sequences
Seq C1 exon
ATGGTAACGCCAGAGAAATACGAGGTAAAGGGCTCCATCCAAGAGTCTGCCATTATCCTTACCTCTTGTGGTGATCCCAAGATGCAGGTGACCATCACCCTGACTTCACCCATCATTCGAGAGGAGAGCAGCCGGGACGGAG
Seq A exon
GTTTGAAAAGACGTTGCACACATTAACCGGCTACCTCTGATTAATATTTCATGCTGATTTTGACAACCTGAGGAGCCCATCTGTTGGCACTGTGGAGATGGTACTGTATGTAAATGTTGCCAGAATCATGTTTGCACCTTTTGGGCTTAGGAGCATTTTTTTTACAAATTAAGACCATAATATTGAAAATGGTCCAAATGAAACCTGGTATGTGCTTGAGCTTGGCTGTACATATGACCTATATTGAACCCAAAAAATCTATATATATAATTTTTTTACTTGTGCTGCTGAGGTATAGTGCCTCCTGTGGTTGTGCTTTGATTTTTATATGAAGTCTGTAATGTTCATACTGTAACTGGATTAAAGCCTGTTCAGCTGGCTTCTAGTTGTTTTTTGAGCCGATTTCAACACTACCAGCTTTTACTCAACCATCTCCAATGTCAGCAGTGGTGCTCTGGTTTTTCTCTTTGTAACACTTTTCCAGTGCTCTTGAAGCTCTCCCCAAAACAAGCATGATAAGTGTTTGCATTGTGTAAGTCTAGTTAGTCCCGGGTAAGATTCATTTTTGTTTCCTGTGTTCAAGGGGATTGTGTCTCATGCAAAATCCAAATGATATTTTGTTACCAATGTTCCAGTGCATATTTCCCAATGGGTCAGGGGGTAATCCTGTGCAAACAACTTTATTCATGATTTAGTTCCTGAAGACATGATTGAGATGGGTCTGAGGAGTAGTTGGAATGTCTACCATGTCCCCACAGGAAACAAATCTCATTTTTGTATGGTGGTGAAAAGAGGTTCACCATTTTAAGGTCCCCTGTTCCAAAATGAAAGTGCTCCCCTGAGAGTTAAGTAGTTTCATAATGGCAATAATTGGCATTCAAACAGTGCATTACTGTAACCTGTAATCTGTAAGTGCATCAATTTTCTGTTTCTTGCATATGTTTTCAATGAAGAGTCATAGTTTGTCTGAAGCCACTGAAATGGTGAAGTTTTAAACACCGGCTTTGAAGCCATGCCACCATTTCTGTATGGCTCCTTAGGGGAGTATCAGTCAGCTTTTGGGAGGAAGGCTTTGATAGAGGAATCTTTGGTTGGACCTGGGGTTTACAGCCTTCGGTATACATTGAGATATGTGGGTTCTCCAAACCCAGTTTTGTTGACAGGTATGCATGCAGTGATGTCCTAATCCTTTAGCTGGGAGCTTCAGATTTTCTTGCCAGCACGCATTGCTGCCTTCATGTATACAAAGCTTTTCAAGTCCAGCCCAAAGCCTCCTTGCATTTTCAGCAAATTGTCTCCCATCTGAGGCTACGTCTACCAGCTCCGGAAGGATTTTTGACCAAGGTCCCCCCTCCTGAATACCTTCAAACACTTTGCCACACCTACCATTGCCATGTTACTGTAGGGAGTCACTATAAATATTCATAAGCAGTGAACATTACATATCTCCCTTTATCCCCGTTTTTCATTATCATTTGCACATCTGGTACCATTTGCAGCCCATTGTTATTTTATTATTATTTTTTTATTGTATTGGTACAGCGATTTTTATTTTTATTTATTTTTTTCCCCAAAAGAATCTTTAGTTTAACATTTATTTTAAACTTCTTATCTAGACACTGGAATCCACAATTTGTTGTCGCCTAGAGCAAAAGAACTACAGCCAAATTCTTAGTCCATAGGTTAAACCAGATCCGCAGGAGTGGAACACTTGCCAAATGTGTTAGTTTGTGGCATAAAACTTCACAATTTTATAGTAAAATTAATAAGCTAATCTGATACTGAACAACAGCAACCATTTTAAATAATACCCTTTCACATATTTGACTGAACTCAATATGATTGCATTAAACCCTGGACACACCTAGCTGATGCCTAATAATAACCCTATTTTCTTTAACCGCTGAGAAGTAGCACTTTTAAAGTTGCTTCACAGCACCACAATTATACAAACTGAAATGTTCTCTACTAGCGGCAGCAGAGCCAGAAACCCTAGCACGCTAATGAATTCAATGAGACTTTAAACTTTCAGTTAATTTTTCCATATAGATAGATGGATAGATTGAAAGAGACTTTTTTTTCTCCCTCCTGCAGTTCTTGGCTGAGAATTCAAGAGAAATCCTTTTTTTTTTTTTTTTTTTTTAAGAATCTAGATCATCATTACCAATTTTATCCTTTTGCAACAACATGGAATTGGATGACCTGGTATTAAGCTTAAAATTTTAACCACACTTTGTGTGAGCCTTAATTCAAGCAGTTTTGCCAATTGCACACCATCCTTTTTAAGAGTTTTCCCCAAACCAATGGGTTTCAAAACCTAAGGTGATTTTAGAATGTTAATAACAGGCTAACATTACTCATTCAAAGTAATCGACTGACTTTTTGAAGTTGATACTTTGCATTGTCATTTTCAGCAATTTCAAATAGTGGATTGCAGAACTTGGAGGCTTAAATGGTCTTTAAAGTTATACATCTAGTAATTCTAAGATGTGTCATGCTCACTATATGCAGAGTACTTGAATTAAAAACAACAACAAAAAAAAGTTCATTTCCAACTCTAAATCCTACATCACTGTCACATTATCAGTGTTTGTCTTGTATCCCTGACAAAGGCCTATGATTCAGGACCCATTTGTATCCAGTTGTATCCACACCACAGACATGCACCAAATGGCAAGAGTAGCAGATCCATGATGTTGCTGAAAAGATCTGAAAGATTCTGCATATGGGGTGTTGTAGAATGGAATTAAAATGAAAACTTGTAAAGTACATGTACAGGTTTTTATATTTTTGGAAGCAGTGATCAGGAACAGATTGGTATGTGTGGCAATGTGTTCTTGGCAGTCTCTCTGACCTGGTCAAACACCCATTCCTTACCACCATTTGACAATTCGATCCATTTTTAG
Seq C2 exon
ATGTAACCTCGAGTATGGTGAAAGACCCAGCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCCCTACGCCACGCTAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109:ENSDART00000074789:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(51.1=100),PF115043=Colicin_Ia=FE(78.3=100)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]