DreINT0177933 @ danRer10
Intron Retention
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40527184-40528718:-
Coord C1 exon
chr5:40528623-40528718
Coord A exon
chr5:40527296-40528622
Coord C2 exon
chr5:40527184-40527295
Length
1327 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GGTGTTAAATTAAATTCAAGGCT
3' ss Score
1.55
Exon sequences
Seq C1 exon
GCTAGGGCTAATGGACTCCAGTCATGTGTGATTGTCATTCGAATACTGCGTGACCTTTGTCAGAGAGTACCTACCTGGTCTGCATTTCCTAGCTGG
Seq A exon
GTGAGTAATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTTTTTTTTTTTTTTTTTTTTCTCTCCATGTTCAGATTACTTTATGCTTTTTGTTTCGGTAGACCTTCAAAAAAAGGTATCTAAATTCTGGAGTATGTCACTTTTTTTGGTTGCCATTTGGTTAATTTATTTTGATAGTTGGTTGTATTCATACACATGTCAAGTAGCAACATGTTATCTGTCGTTTTTCCTTATTGTCTAGAATTTAGTGAATGCATAATCTGACACCATGTTCATTGTAACACAAAAATATTGGGTAGTCTAAGGCAAAGAAAGGTTCAGAGTTTCTTTTTGAAATTGAGTTTTGCATTCACTGTATTTTGCATTCACATTCCTGAACAATGAGAATTGTAATTTTGAGACCTTACCTGCAGTTTTTATGTAGAATTTTTATAATGCAATATAATTCAAAGCTTTCAAGATTGTCAAGTTTGTTTGTTTTGATGGCGCACGTTAGTGGCCAACAAATTTCCTGTGTATTTTTTTTTTTTTTTTTTCTTGAGTTTGTTGCTTTCACACCACACGCATCAAGCACGTGTATAGACATCCTGCAGTGTGAATGAGGAGATTAGTTCAAATGAAGCAGTACGAATCGATCAAGTAGGAAAATATGAACTTCAGTGGACATTCGCGCTGCATTAACCAATCAGAAGCTTGCTCTTATAGGGGAGTTACTATGTAGTGTCAGTTGTTGGTGTCTCAAGCGAAAATCCTCTTACAGACAAGTTCATCAAACTGGGCCCTGCTCAGTCTGAAGCACCACTGAAGCCCTTTATCCAGATATAGTTCCTGGAGGAGTTGATGATAAACTCGGAGAGCTGGGTGCTCCTCTGAAAGAATCTAATGGACTCTGACACTGTGCCAAACGAATATGCTGTTTTTCAGCCTTCCTAATGCACAAAGCACGGCTACTATCTCAATAAAATCCATATTAGCCCATGCCCATGACGTGAATCTGCGTCTATTGTGAAGAGGATTTCACTCTGTTCATGTGTCCATAAATGATATTAATATTAATAACATAATAATATTGCGTTTTTATTTTTTATTTATTTATTTTTAATTAATGCGTACAGTGTCTGGGGTGAATGCAGCATTAGGAACCAAAGTACTAGGGAACGTCAAAGTCTATTTTGTTGTGATGCAAACAGATGGGTACAAGTTAATTTTAGGAATTCTTGTTTTTTTGCACTCTGTCTCCTTTTATAACCTTTGGTGTGGTTTAGCAATGGTTTTCAAATTACAAGCAACTAAATTAAATGGTGTTAAATTAAATTCAAG
Seq C2 exon
GCTATGGAGCTACTGGTGGAGAAGGCCATCAGCAGTGCCTCTGGACCAATGAGCCCTGGAGATGCTCTGCGAAGAGTCTTTGAATGTATTTCCTCAGGCATCCTGCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109:ENSDART00000074789:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.4=100)
A:
NA
C2:
PF075289=DZF=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGGGCTAATGGACTCCAGT
R:
AGGATGCCTGAGGAAATACATTCA
Band lengths:
200-1527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]