GgaINT0063939 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:9105484-9108599:-
Coord C1 exon
chrZ:9108504-9108599
Coord A exon
chrZ:9105596-9108503
Coord C2 exon
chrZ:9105484-9105595
Length
2908 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AGGTTTTATTATTATTGCAGGCC
3' ss Score
5.88
Exon sequences
Seq C1 exon
GCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATTCGTATTCTTCGTGACCTCTGTCAGCGTGTTCCAACTTGGTCTGATTTTCCAAGCTGG
Seq A exon
GTGAGTAATGCTCTTTTGAATGAGTCTTTTTGAAATTCATATACAGGCACTGGAAAAGGTTCCTGCCATTAAATGTAGACTTTTTCAAGCAGTAGTATTTTTTGTTGTTGTTTTTGTAAATACGGGGAATGTATGTAGTCCCTCTAGAAACTTAGTTTTCAGAGGTTCAGTCATTTGGAGATGGAACATTTTTTTTCAAAGGAATTTTCTTGTTCATATTAATTTTTTATTGGTAGAATCCTTATTCTAGATGTTAGGTGTTTCTTATTTGCTTGTTTTAACTCTATATAAAGAAATCAATCTTTTCTAGCCACCTACTGGTGGTTGGTTAGAAATTGTCTGAACTTTATCAAATGAGATTTAGCAGTTATATGTCCCCAGGTAACACTGTGATAACAGAAGGCTAATCTAAAGAACAAATGAAAAAATCACAGTAATTCCTGTGGTTGTTAATACAACCCTTCTGCAAGATGAAATATGACAGTACTAGTCAGTGGATGTGTCAAAATTCACATCTTGATCAGTGTCACCTAAGAACAGGTTTCTAAGTTGAACTCATTTACTTCTTATAGTTTTTCCAGCTGGATATTCTTGGAGAATTCCTTTTACATTGACTATTATAAAATATGCTCTCTGGGAATGCAATCTGTTTTACGATTTGTTAACCAGAAAAGATTAGTCTGAAATAAAAACTCTCAAACATACGTATATTATGCAGGTAAACTGACTGGTTTGTTTCACAGACCAAATTCTGTTGCATTGTGCTGCTTCCCGCTGTAAACTCTTCCCTTTTGGTAGTAAGAGAGCTAACATTGTCAAGGCAGTTTCAATGGTTGTCATTATTTTAATGAACAATGTTTTACATCTGTATTAGGCTTGCAGATAATTTTATTAAAATACTTCTGATAATATTGATTGTGTCTGGAAAAATGTAAAAAGGTTACGTTTAAGTTTTTATAGTAATATACGAATATCCTGCTAGTTACCATGCTACATTTCTGAAAGTTATACTGTACAAATATAGCTTAAAAGAAGCCAGAAAAGTATTTAACCGACCTCTTTATTATCACCACAATACTGAACTGCCAAAAAATAACCGCTGGCATAGTTGTAGAAAAGCATCCTTATAAGTATCACAACACACAGAAGGCATATGTATGGGGAACAAGGGACTTTATTTTCCTCTTTGCCGCATTGTCTGTTCTGAAGAACATCCTGAAGGGAACAGAGATTTGTGTCAGGCATAGCTGTGTTCTCTGCAAGAAGGCTCCCTCATTTGCTTCTGGCACAGGATGACAGAACAGGCTGTGTTGGTGAGTGACGTGGACCAGCACTGAAATCTGTGTAGTCAGTTATTCTTCTGGACTATTCTCAAAGTCTTACTGACAAAAGAAACAACAGAGTACAAATGGTCATGTTTTAAACTTATGTAATTTCTGCAAGTCACAGCTGGAATTTTATAGATCTGGATACAGAACTTCTCCTGGCATGTATGCTAGCGGCCTGTAACAAGTAAAGGACCTTTTCAAAAAGAGCTCAACTATTTTTAACAATAGAAAATCCTCAGAAGATTAAACACAGAAATTGTTAGCCTCCTTATATACCTAAAAATAAAAACTAAGCTTGAAGAATTTTGTCAATTTCCTACAAATCATTCAAGATTATTCAAGATTAATTTTCCAGACGTGTAATCTAGCCTCTAATGCACACATACGCTGGGGCATTGTAATTCACATTGTCCTATCTTGAATCCAGAAGAACTAGATTTGAATAAGTGCAAAAACATTATTCCTTTTTTTTTCTTTACTGCTACGTTTTGCTTCATGATTGAAAACAGCTATTACTGTTGATAGAAGTGAGAAGCTTGGTCCAGAGTAATATGGTGGGACCATGGTAATGTGATGCTCAAGAAGTGAAAATTAAAAGTCAAATCGAGCCAAAAATTGGAAGGAATGAGCATCCTTAATGAAGAATTGTAATCAACATTGCCTGCAGTAACTTGGGTGAATTTATTCCTAGGAAGTGAAAATAAAAGGTAACATTTGAAAAACTGTAAACTAAGGGAAAAAAAAAAAAAAAAGATGTTTGCAAATGAAGTTTGCATATGAAGTAGTATTGAAACATCCATTTAATGCTGAAAAAGCTAAGGAAAGCTGTTCCTTACTACTGCAAGTATCTTCTACGGGTTTTTGTTGTTGTTGTTTTTTTTTAAATAATATCTAAGAAATGCAAAAAAAAGAAGGAAATAGTCTCAGAGGGAAAAAAGTAGTATTTAAGATGCTGCTAGTCACTTAAGCCATTTTAGATGCGTTAATTTTTGAAAGTCTGTTAATCATTAAATGTGGGTTTTTTCCACACTTGTTGAACATCTCAGATATTGTTAGCTTATATCCAGGAAAAAAAATCTACTGTAAACTTCAGTTTTGTTAAACTGAGGACCTAGTAATTGTTTAGATTAAACTTCAAAAGACCATTATGTTTTTGATTATTTGAGTTTGTGTTCTTATAGCAAAAAACATTGTCATATTCTGTTAATCTCATTAGGGATACTGTGCACTGTTCATTCAGATGGCTGCCAGATTCAGATAACTCATCTTTTTTCATGCATACTCAAAAAAATGCTGGACAAGTTGGCTATCTTAATGTGTGGGGTAGCAGCACTGTATAAACTTATGAAAAGCTTTTGGGCTACCTTTGAAAAGAGAGAGATCAAAACAGATATTTGCACCGGCTTTCTTTTTATTTGCCTTTATAAAACAGCCTTTTTTTGTTTGTTTGTTTGTTTGCTTCTGTGTTGTATAATGTTTTTCAAAATTCCTATATCAAAAGGTCTGAACTGGATAACAGTAGTAGCATTATTCTGTTTCAAATAGTCTTCTAAATTAACCAGGTTTTATTATTATTGCAG
Seq C2 exon
GCCATGGAGTTGCTCGTGGAAAAAGCAATCAGCAGTGCTACTGGACCACAGAGCCCTGGGGATGCACTTAGGAGAGTTTTTGAGTGTATATCTTCAGGAATCATCCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.4=100)
A:
NA
C2:
PF075289=DZF=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]