RnoINT0168800 @ rn6
Intron Retention
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62204067-62208385:+
Coord C1 exon
chr2:62204067-62204162
Coord A exon
chr2:62204163-62208273
Coord C2 exon
chr2:62208274-62208385
Length
4111 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTTATGTTTCTAATTTTAGGCT
3' ss Score
10.24
Exon sequences
Seq C1 exon
GCTAGAGCTAATGGCCTACAGTCCTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTCAGCGAGTTCCAACATGGTCTGATTTTCCTAGCTGG
Seq A exon
GTAAGTAGCCGTGACAGACAGCAGTGTGGAAAATGGGTATTGAGAAAGTTTTTCTCTCAGATCTTTGTCCTCGGATTTCATTTGTCCTATGTTGTCTTTTATATGTTGTGTTCTTCTGTTTGATAACAAATTTACTAATTTAAAAATTGTCCTTGGGCTGGTAGAATACCTTAGTGGGCAAAGGCATTTGCTACCAAACTTGAGTTCCATCCCTATGGTAGAAGGAAAAGAGAACTGACTTCTAAAACTCGCCCTTTAACCAGAGGAGTAGGGCAGCACACTTGGAGAATTGTGTGAGTGGATGAATGATAGTAAAAAAAATTCAGGATGGTTTGCTCATTTAAAAAACAAAAACCAAAAGCGTTATAATGGGTTGCATAACAGCTCAGCTGCGCAAGCTTGAGGGCCTATGACCCCCAGAACTCACACATAAATGATAAAACTCTGGTCTTGCTGTAGCCTTAGTCCTGTCTTGGCCAAGACAGGAAGGAGCATTGCTGTCCACTGACCTAGCTTCAGGTTCAATGAAGAGACACTTTTGATAACAAAGGTGTTGAAGTCCAGTCACCCTGAGCTTACGAGTGTGAGAGCCTGTCTTAAACATAAAAAGACTCGCTGCCTTTCTTTAAAGGCAAACTGTTCTTTATAATAAAACTTCAGAGACTTGTTTAGAAATATAATTGAACCTGTTGATTTCAAAGTTAGGTTATTGAAAGCTAAACAGCCAATGTTATCTTTTATTTTTTTATTGTTTTGTGTTTAAGAATTACATGCTTTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAACGCAAGGCCCTGGGTTCGTTCCCCGGCTCCGAAAAATAGAAAAAAGAAAAAGACCATTATGGCAGAGAGAATGGGGCCAGGCAGGCAAACATCATACTAGGACAGTAGCTGAGAGCTTTCTTGTTGAGACAACAACCAACAGTCAGAGCTAACTGGGAATAGGGTGGGCTTTTAAATCCTCAAAACCCACCCCCCAATGACACACCCCCTCCAATAAGGCCACACCTCCTAATCCTTTCCAGTGCATTCTATCAAAGATATTAGCCTGTATGGACCGTTCTCATTGAAACTACCACATTCCACTCCCTGCCCCCATAGAACTGTGGCCATACCACAATGCAAAATGAATTTAGTCTAACTTCAAAAGTCCCGGGATTTCTTCAGTCTCAACAGTTTTCAAAGTTTAAAGTCTCTTTTGAAAGTCTCTTAGTTGTAACTCCTTCAAAAACAAAACTAAAAAGCAAGTTATATACTAACAAGCCATGTACTAGCAAGTTACATACTAGCAAGCTATATACTAGCAAGTTATATAATAGCAAGTTGTATACTAGCAATATACCGTGGCACAAAATAAACAGTACCTTTCCAAAGGGTTGGAAAAGAGGGGCATCCTAGACGAAAAAGCAAGACCAAAACCCAGCAGTACAAATTCTAAATCCTGTAGTTCTGTGATGTCACAGGGATTTGAGTGCGCCTTTCCAATTTGTTAACTGCCACAGACCTCTCTCTTACCCTGGTTCCACTCCCTGTCTGCAGCCCTCCTTGGCAGACATCCCACAGCTCTAGTAGTGCCTCCAACACAATCCACCCTTCACTTTCACAGCTTTCTGCAATGTCCTTTCTGGGCCTTCATACAGGGGACTCCTTCCTCTGCCACACACCTGGACTCAGTGGCTTTCATTAGCTGAGGAAGAAGAGTCCACAATCCTGTACTATTATGTCCTTCGTGGTTCTGAAACTAGAACAATGTGGCGGTGCTGCCAGGTTCTTTTGCCTTCTTGGGATGGAAACTGGTCCCCTCCTCAAATTACATTTGCTTAAAGTTTTCTTCGTTGATTCTCATTTGGAATAAGTAATTCCTTAATGCAGCTATTCTCACCCTGTGGGTTAAGATGCCTTTGGATGTCCAAATGACCCCTTTACAAGGGTTGCACGTCAGATAGCCTGCATATCATACATTTCACATTACGATTCATAATAGTAGTGAAATTACAGTTAGGAAGTATGAAGTAGTATGAAGTAAAGTTACAGTTAAGAAGCAATGAAAATGTTATGGTAGAGAGTCACCTATCAGCATTAGGAAGGATGAGAATCACTGACTTAGGCCATTTCTTTTCACAAATTACAGGATTAGCTGATAGGGTCTGACCACTCACTTAATTCCATTTCTCCTTACCTCTTTGAGCACAAACTAAGGGTCCAACATCAAATTTCCTGGTGCTCTTTTTCACTGTAGACCTGCCTAAGAGTGGTTACTAATAACCACATGACAGAAACAAAAGTACTTTTGAAATCCTCCTCTGTCATTGAAATTAGTTCTTAAAACAAGAGCAAAAACCAGGCACATACTTTGCTAAAACATCTCAGGAATGATCTCTGGTCCAATTGCTAATAACTGTTTCCATCAAAGACCTCTTCAGCTCAGCCTCTGTAGTCCGTATGGTTCTCAGTACTAATGGCTTCCCGGCTCCTCCTAGGATGGCCTATTAAGTCCTGTTTATATCATTCTACTGCTCTGGACTCTACTGGCCAGAGTCCTCTACAATGCTCCAAAAACAGAACGATTAGTCTTTTACACAACAATACTGGCCTTTTCTGTTGCTGTGAAGAGAGACTGTGTTCAGACAAGTGATAAAAGAATTTACTGGGAACTCATGATTTCAGGGGACTAGATTTCATGACCGTCGTAGTGGGGAGCGTGGTAATAGGTTGGTGTTACATTGGAGCAGTACTAAGAGTTTAAATCTGATCCACAAGCAAGAGGAGAGCTAATTGGGAATGGCATGAGCTTTTGAAACCTCAGAGTCCACCCTCAGTGACCCTACCTCTTTCAACAAGGCCACACCTACTAACCCTTTTCAGTTTCACCAACTGAGGACCAAGCATTCAAATTAAGAGTCTATGAGGGCCATTTTCATTCCAACCATCATAGTTCCATAATGTTTTGGGTTTTAGCTTGGTATATAGTAAGTAGCCTTGGGATCTTCCTGTTTATCTCAACTTTGACTTCATTTTTGTTGGCTTCATGTAGTCATTGAGTTCTCTTAGAATCAATTTTAGATTGTATTATAATTCTTATAAGTTAAACTCATCCAAACAGACATTTTCCTGTTTGGTGCAAGCTATTACATTTTTGCTCCAAAAAGAGGCTGGAGTGAAGGCTCACACTTGTAGCCCAGTACACAAGAATCAAAGCAGGCCTGCTGAGGTCAAAGCAGTTGTCCTAGGGTTAGCCTTGAGTTGCAAAGTGAGATTCCCCAATTTTTAAAAACACAGAATTGAAATATTAGTGGAATGTTGGCCTGCTCAATCTACTAGAAACAGTATTCTGTAGGTATTAGCCTGATGTTTTTCATTTTTAGGTACAAATCTTAAAATGTAAAGTTTTGTGTTCCCTTAAGTTTCTGGGTTTTTTGACACTTTGTTGTGTTATATTTGCCTTAAACTTCTGACCCTACTGCCTTGAGTTTACTTGGTAGCTTCTTTTGTGATAGAGTCTCTCTATAGTTCTGTTTCTCCTGAAGCTCACTGTGTAGACTAAACTGGCCTCAAACTTGCAGAAATCCTCATACCTCTCTGTCCCAGAGGCTAGCAAGTTGTTTTGTTTGATGGGTGGCTTTGTTTTGTTGTTTTGTAGAGGTGGTGCTATGTTGCCCAGACTAGAATTCTAAACCCACTCATGGGCTTAAATAATTCTACTAAATCCTCCAAAGAGATGATAAAAAAGGCATGAAACCTCATGCTTTTATTTAACTTAAATATTTATATATTTTTTAGATAACTGTTTTACATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAATTGGAACAACTTGGAGGAGTCCGTTCTCTACTGTGGGGATCCCATCAGGGTCATCAGCTAGAGCTCCTCACTCACCTGCTCGCTGAGCCTCTTCACTGGTTTATCATAGCTTCATGATCTTTAAAACCTTAGCACTGAAGAACATACCCATCATTCTGATGGTGTTTGAAAATGGTCTGTATGCTTTTGGACATATTTTATGTTTCTAATTTTAG
Seq C2 exon
GCTATGGAGTTACTGGTAGAGAAAGCAATTAGCAGTGCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATTCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627:ENSRNOT00000016196:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.4=100)
A:
NA
C2:
PF075289=DZF=PU(39.1=97.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]