DreINT0179413 @ danRer10
Intron Retention
Gene
ENSDARG00000052244 | zgc:158564
Description
zgc:158564 [Source:ZFIN;Acc:ZDB-GENE-070112-1662]
Coordinates
chr7:39399792-39403445:+
Coord C1 exon
chr7:39399792-39403110
Coord A exon
chr7:39403111-39403336
Coord C2 exon
chr7:39403337-39403445
Length
226 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGTTTTTTTTATTTGAACAGTTT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTACTATGAAGCTTTTCCACCCCTGTCAGAAAAACCTGTTTGTCTTCAGGAAATTATGACGGTGTGGAACACAGCTAAAGCCTGCACATATTCCAGCTCATCATCATCTGCTGTCCCTCAAACAAGCACAGACACATCCTCTCCAAAAGACTGCACCAGCGAGGGTGAAGCCTTTAAAGACCGAACAGTTGATGCACCCAGTTCCACCTCCACAACCAGCGAGAAGGCCCAGCAGCGACGCACTAAGAGGGAGAAGGAAAACAGATTCCATGGAAGCGCAACAGGAATGCCTGACGATCAGGTTGCTCCTCATAGCAAGAGGCAGGCCAGACACCGGTCAGAGGGGAGATTCCGTCCCCGATCATGGTCCTCTGGCTCCAGTGAGGCAGGCTCAAGCTCCAGTGGTAACCAGGGTGACCAGGCCCCTAGTTGCAAATCAGTCCGCATAAGACACAAGTCTCGTGAGGTCAGTGGCAGAAACAAAAAGGGCCGAAGTGGCGGTGGACAAGTCAAACTGGCCCTAAAAGTAATTGACAAAGAGGAACGGAAAAATGCACGAGGCAACATGAGTACCACTGGAGGCCCACCTAAGCAACAGCAGCACTACATGAAAAAAGGCAAGAGACCTCTGAGGGAGATCCGCAAAGATGCTAATCTGGTCGAGGCACAGGAGTCTGGAGGAGAGGCCAGTAAAAAGGAATATATGGAGGAGCCTCTTTGGTACACAGAGCCCATTGCTGAGTACTTTGTCCCTCTCAGTAGAAGTAAATTGGAGACAAAGTATCGGAGTAAAGAAGACTCTTCCAATGACCTAGCTATGTCCATTGACGTGGACTGTCTATCGGAGAGAATTCAAGGCATCTGCATTGCAAATTCTTGTTTTCAAAGGGCATATCTTGCAGCAGGAACTTTCGTGGATGGCCACTTCATTGAAATGCCTGGGGAAGGTGACGAAGAGGCTTCTGAACTAAATGGGATTCCAAGCTGCCCTCCTCCTGAAGATGGTCAAGATTTAGATGATGAGCATCTGTCTGAATTCACTCACTTCTATGAAGTTGATCTTTATCAATCCATATTGGATCCTAGTGCCTCAGATGCGGTACAAGAAAGTCGAATCCTGAGCATGATTCGGCAGAAGAGCGTTGAAAGAAAACACTTTGAAGCAGGATGTGTAGTTTTAGATGGCCTTGAGCTGCAAGGGGAAAGTGCAATAAGGGTTGATTCTCTGGGAGCCTCAGAAGCAGAAGTTTCTATAACACAAGATATGGAAAACATCGCCCAGGTCTGGGAGTGCTGTTCGTCGTCTAGCTTGGAAGATTTGGAAGGAGAAAGTTGTCCAGGTGATTCTCCAGGCAGGCTCTCCCCAGTGTTGGACAGTGTTCCATTTAATTTTAGCAAGCTGTCTGGAGCTTATGTAGGGTCTCGTCTCCAAGAGGCCAGTGGTAGCAGCTCTGCCCCAAACCCCTACTTCTCACTTTTTGAGGTGCAGTACGATAGCCCTACCTTTTCTTTTCCATGCGACTCACTCACAGGGGGTCAGGAAAATGTAGATTCAAGTAGCTGTTTAGATCCACAAGGTAACAAACAATCCCGTTTGCTAATTTGGACCAAAAACAGTGCCTTTGATGAAACAGAACACTGCTCTAACTTATCCACAAGGACCTGCAGTCCGTGGTCCCACTCAGAGGAGACACGGTCCGATAGTGAGCAGGTCAGTGCTCCAGCAGACGAATCAGCTCAGTTTGGCAATGAAGAGGTCAGCTGCATCTCCCTTATCCCACCTTTATGCCTAGAGGAGGAGCTTTTAGATTTCTTTCAAGAGAACTCTAGTCACCAGCAGGAAGAAACGAGTGTAAGCGCAGAGTCCAACCAACCCTTCAATAAGAAATCGAAATTGGAGTCTGTTTGTGGCATAGCACTAGAGCAAGATGAAAGTAAACTCTATAATGCTGTTGTGTTTTCAGATGTCCCAAATCAACAAAGTGATGAATACACCTCAGGGATAATAAAAGACATTTGGATGGCTATTGGAGATAGAGACTGTGTCCTAACACTCGGGGTAAAGAATACAGGGGAGCACTTGTTTTCAGAGGATTCTACCAGCTACCAATGCAGCTGTCTTGACAAGGATGCAAAAGGAGAAATTATTCAAAAGAAAGCTGTGCAGTGTTCGGAGTATCATCTTTGGGATGGGCAGAAAGAGAACGATGGACTTCCTAAAAACAAGCTAACTAAAATGAATGATGGGGATTATACTGCTCCGGCCAAGCCCTGGAATTGTAACTCACAGGAAAGCACCTCATTTATTCTGGGTGGGGTTTATGGAGAGCTGAAGACTCTAAGTGGCGACAGAGAATGGGCAATGATTCCACCTGGTGATGCTTGTGGCAGCTTGTTGCAGTGTGCAGCGGCCACATCTTCTGACATGGTAACCATTGCTGGAGCGGATGTGTTCATGAACACAAGCAGTTGCTTTGCTCCTGGCCACAAGCCACTGTGGAGACCTATTGTGTCCCTTGGTCAAAATGAGCAGGCAACCAAGGGAACAGGGGAAGGTTTGAATAAGGGATTTTCTGTTGTCTTCCATGAAGATTTACTGGGATCATGCGGAGGCTTCCGTGGAGAAGAGTCGGGACTGGATTATCCATTTTCATCCTTTGATTTGAACAACCCTTTTTCCCAAGTCCTGCATGTGGAGTGCTCATTTGAGCCAGAGGACATGGCCTCTTTCAGTCCGGGATTTAAGCCAAAATCCATATTATGCTCAGACAAGGAACCCTTTTGCCCTTGGTTATATGGCATCAACCGGACTCAGTATCGGGCCATTCGAATTTCCCCAAGGACTCATTTCCGGCCAATATCTGCCTCTGAACTGTCTCCAGGTGGGTGCAGCGAGTCAGATGTAGAGTCTGAGAAAGAGGAAGCAAGTATTCCAGTTGGTCAAGCAGACCTCTTTGATGACCCGCAGGCTGACCTTAAGCCTCTCGAGGAGGACGCAGAGTGTGAGGGCCCTTACTACGGGAAATCTGAATTGGAGTCTGGCAAGTTCCTACCCAGATTAAAGAAATCTGGCATGGAGAAGAGTGCCCAGACGTCTCTGGATTCGCAGGAGGGTGGGAGCACCCTTCTGCCAATTACTGAACAAGAGATTTGTGTACATTGTGAGGTGGCAGCGGATTCAGTGCCATGTTCTCATGTACAGTCTTCTGTTCTTCTACAAGAGGAGACTAGCGGAGAGACAGAGCCTTGCAATTGTGTTGCAACTGGTCAGATTCCTAAAAGTGGGAAGTCGCTGGATGTTGCTCAAGATATGCATGAG
Seq A exon
GTAAGGGACCCCCTCTGTCATTAACATGGACATAATAGATTCATGTGCCTTTGGCTGTTGCTATTGGTATTATCTGCACTTTACTATGCAGTTAACTTGCATATTCCATGACTGTGATTGATGCTCTTCAGTTATCTAAATCTGTCAAAAATGAACAATTTAGAACATACCCTGATACATTTTGCCCCCTCAATTGTCTTCTTAACTGTTTTTTTTATTTGAACAG
Seq C2 exon
TTTCCTCTGTTGAATTTTGGAGAACAGTGCTTAACCAACATGCAACAAGAAGAGTGCTGGTGGCAAAGCTCGCTATGTTCTCCTTTATTTCCAGGTTCTCAGTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052244:ENSDART00000146171:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(85.3=100)
A:
NA
C2:
PF153761=DUF4603=PD(17.9=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGTCTCTGGATTCGCAG
R:
GCCACCAGCACTCTTCTTGTT
Band lengths:
295-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]