MmuINT0046099 @ mm9
Intron Retention
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36950587-36959183:-
Coord C1 exon
chr5:36955895-36959183
Coord A exon
chr5:36950696-36955894
Coord C2 exon
chr5:36950587-36950695
Length
5199 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
GTTTGGCTTCATCTAAACAGTTT
3' ss Score
6.1
Exon sequences
Seq C1 exon
GTACTATGAAGCATTTCCACCACTGTCTGAGAAACCGGTTTGCCTGCAAGAGATCATGACCGTGTGGAACAAGTCCAAACCCTGTTCTTACTCTAGCTCCTCGTCATCATCCACAGTCCCACCAGCAAGCACGGATACATCTTCTCCAAAGGACTGCAACAGTGAGAGTGAAGCCGTCAGAGAGAGAAGCAGTGTCGCCTCTGTCCCCATGCATGAGAAAGCCCAGAGCAGGAGCAGACACGAGAAGGAGAGCAAGCTGAGCAGTAGCACCATCGAAGAAAAGCCTGCCTTTTACAAAAGGCAGATCCGACACAAACCTGAAGGGAAGACGCGCCCTCGCTCATGGTCATCTGGCTCTAGTGAAGCAGGTTCAAGTTCAAGTGGTAACCAAGGAGAGTTAAAAGCATCCATGAAGTATGTTAAAGTCAGACACAAGGCACGAGAAATTCGAAACAGAAAAGGGCGGAATGGGCAAAACAGGCATTCACTGAAGCATTGTGGAAAGGCAGAGAGAGGAGTCCATGCAGGCAGTGGTGGCAGCAGCAGCAGCAGCAGCAATGGGTCCATCAGGCAGCTGTGCAAGCGGGGTAAAAGACCAGCAAAGGAGACGGGAAGGAGCGACTCTGGGAACACTGCAGTGAAAGACCTGTATGTGGACAGCAGAAACAACAAAGAGTACAAGGAAGAGCCCCTGTGGTACACAGAGCCCATTGCTGAGTATTTTGTTCCTTTGAGTAGAAAAAGCAAACTAGAGACCACATACCGAAACAGGGAAGATACAAGTACTCTGACAGCAGAGGCAGTGGAAGACTTGTCTGACTCTGTGCGTGGTCTGTGTATCAGTAACAGTAATATCCACAGAACATACCTCGCAGCAGGTACTTTCATTGATGGTCATTTTGTAGAAATGCCTGCAGTTATAAACGAGGATATTGACCTCGCTGGGACCTCATTATGTTCTCTACCAGAGGACAATAAGTATCTGGATGATATTCATCTATCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGAAACAATGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAAAAAAGCAAGGAGAATACAGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGTATGGAGTTGCAAGGGGAACGTGCAATATGGACAGATTCTACCAGCTCTGTGGGTGCTGAGGGCTTCTTCCTGCAAGACCTTGGCAATCTGGCTCAGTTTTGGGAGTGTTGTTCATCTAGTTCTGGTGATGCTGATGGAGAGAGTTTTGGAGGAGACTCTCCAGTTAGACTCTCTCCTATCTTGGACAGCACGATGCTCAGTTCACACATACTTGCTGGCAATCAAGAGCCCTTTTCCAATATTAATGAAGGATCTGGTATAAACTCTTGTTTTTCAGTATTTGAAGTGCAATGCAGTAATTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAGTGAACATGCAGATTCTAGTGCTAATATGCTGGGGAAAACACAGTCTAGATTGCTCATATGGACCAAAAATAGTGCCTTTGAAGAAAACGAACACTGTTCTAATCTTTCAACAAGAACTTGTAGTCCGTGGTCCCATTCGGAAGAAGCACGCTCAGACAATGAGACACTAAACATTCAGTTTGAAGAATCGACACAGTTTACTGCAGAAGATATTAATTATGTGGTTCCCAGAGTCTCGTCAGATTTTGTAGATGAAGAGCTTCTAGATTTTTTGCAGGATGAAACTTGCCAGCAAAACAGTAGAACTTTAGGAGAAATTCCTACATTAGTTTTCAAAAAACGATCTAAGCTAGAATCTGTGTGTGGTATTCAGCTAGAACAAAAGGCAGAAAGCAAGAACTTTGAAACTACACATGCATGTAGTGAAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGTAGGTAGGAGTTCTGTGGCTGCAGTAGAGACAGAAAGAACTGGGGAGGAATTGTTTTCCACAGATGTAAATAACTACTGCTGCTGTTTGGATACTGAGGCGAAGATGGAAGCCCTTCAAGAGCCTAGTAGGGCTGTGCAGAGATCAGAGTATCATCTCTGGGAGGGACAGAAGGAGAACATGGAGAAGAGAGCATTTGTCTCTAGTGAGCTGTCCAAGGTGGATGGTGGCGATTACACCACACCCTCTAAACCTTGGGATGTGGCCCAAGATAAGGAGAACACATTCATTCTTGGAGGAGTTTATGGAGAGCTCAAAACATTCAACAGTGATGGGGAGTGGGCAGTTGTACCACCTGGTCACACAAAAGGGAGCTTGCTACAGTGTGCAGCCTCTGATGTGGTGACAATCGCCGGTACAGATGTCTTTATGACCCCTGGAAACAGCTTTGCTCCTGGTCACAGGCAGCTCTGGAAGCCCTTTGTGTCATTTGAACAGAGTGACATGCCGAAGAGCGGGGAAAATGGAGTAAACAAGGGGTTTTCTTTTATCTTCCATGAAGACTTGCTAGGAGCCTGCAGTAACTTTCAAGTTGAAGATCCTGGCCTTGAATACTCACTCTCTTCCTTTGACCTAAGCAACCCCTTCTCACAAGTTCTCCACGTAGAGTGTTCATTTGAACCAGAAGGGATTGCATCTTTTAGCCCCAGTTTCAAGCCGAAATCAATCCTCTGCTCTGATTCAGACAGTGAGGTTTTTCACCCCAGAATATGTGGTGTCGAAAGGACACAGTACAGGGCTATTCGAATCTCTCCCCGGACTCACTTTCGCCCGATTTCTGCATCTGAACTATCCCCTGGAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCGAGTGTTCCCATTCCTTCCCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAGGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTTGAGTCTGGGAAGTTCCTGCCCAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAACTGGGATTCTGCCGAAACAAAATCAGTGTTTGGAATGTAACTTTAACGAATCTCTAGAAATTAATTTAGAAAGCTCAGCAGCAAACTGTAAAATAATGACACAATGTGAGGAAGAGATGAGTGAGTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
Seq A exon
GTATGTGTCAGTATTGAATAAGGGGTTTGATCAGACATTAATGAAAGGCAGCCTTATCAGACAAGAAAAGTGGGACTGGATTACTAGGAGATTAATCTTAAAGAATTTGAACTTAGAAGTCTTAGTTTACATTTAAGGACTTAAAATGGATTTGCTGTTTACAAATTTGAAGTAAATAATTGACTCTGCATGGAAAAGACGTACTAACTCTCAGGATGCGAAGTTCTTGTATAATATGCGTGCAGTGTGGATAAAAACGTAAGGCCTGGTGTAAGCATTTTCTCGTTCAGAGTCAGGGAGCCAGAATGTAGCTGTGAGTAAAGAATGCTGGTCAGTTTTATTATAGTTGTGTATTCCATGTAAAATACTTTACATCTGGACACCATTCTCAGACGTGCATTGTGGTTCATGTGTAAAGGGACCAAGTGAAGGGACCCGTCTTCTTGGTGCTCATTGAGAATGGGCTCTGGGTGGGGAGTTTCGTGTGGACCTGCTCGGTGATGTTAGTGTCAGCAGTTTTGTTAATGGAGTCATCATTCCCCTTGAATGTGTTTCTAGGAAGTCCCTTGAAGTTAAATTGGCTGTACCAGAGCAGACACAGCAATAAGCTGTTCCACCGAAAAGAGCAGAGCTGCCTGCCCACTTTATTTGATGATTAGTTGATATAGCAGTGCCTGGCTTTTTTCCAGAAGCAGGTTGTTAAACAGTGTTGGAGGCAGTCTCAAGTCAGAGCCACCTGATGCAGATGGATATGTGTGTCCTTCCTCTCATCCACCCTGCTTACCGGCTCCCACGCATCCTGTGAGGCCCTCAGATCTACCTCCTTCATGGATACCTCCCTACATCCTGTTCAGTCCTCATCCCACCTCATATCAGAATTAATTTCTCCCTTTTCTTAATTTACCTGCACTCTCAGCCTCTTTTTGTAATTGCATTTTCTGTCTCATGAGTTCCTTGCCTTTTTGCCTTTACCTTTTTCTTTGGGGGAGGAGGGTGGTACTTGGCTATTGGCTTCTGTAGCTGGGAACTGGGCACTGAATCATTGGAGGCAGGGTACCTAGAAGTACAACTGCTTGCCTTTGGATAGTTGCAAGAGCCTCAGGGGAACTTGAAGACTGCTGCTCTAGTTAGCATGCACCTTGGTCTATAAAAGGCCAGATTTAACCCCATTGAATCCCTGAAATCTGAATTGTTAAGGAAAACCCAGCAATGTTGTTAGCCTTTATGTGTTGTTGTGTTGCCCCCCCATTTCCCTCCTTAAATGTTCCTTTATGTACTTTGTATTTCACCTGGTTCCAGATTGGGAAGAAAGAAAATGAGGAAAGAAGCAAGATTCTACCTACTACTACCATATTCCTTCGCTTTCTAGTATGTTGATGTATTTCCGTGTTCTCAGATTTGGGTATCCTTTCCTTTCCTTCCTTCCTTCCTTCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTCTTTTTCTTTTTTTCTTTTTTTTTTTTGAGAGGTCTAGCTTGCTGCAGACTTGTGGGGACATCTTGAGAGTATGGGTGCTGTCATGCTGTTAGTATCACTGCATCACTGCAGTTGGAGCTCACTTCATAGGCTGGCTTGAGGAACAGTGTTGAGAGTGGCTTGAAGGAACAGTTTGTGACCAGGCTGAGGCTAGGACCTGTGTCTTATCTACCCATTGTAATGTCCAGGTCAGTTATGAGGAGTTCCTAAGACTGGCTCCACTTAGGCAAAGGCCTTCTGTTTCAGTGCAAGAAAATAAAAATAGAGGATTTTCCTTAGAATTACCAGTTAGGACCTTGGAAAGAATTGGGTTTATTTCAAAGTTGAGTCAAATTGGGCAGACATGATTTGGATTCCTATTATGTGCCTATCACTAAGGGGAGAGCCCTAATGTGTGCGGTGCCATCCTTGTCTGTGAGAAGTTCAGTCTAGACAAGAAGCCCAATTTGTAAATCCATCTCTCATCTGAAATGGGCTGTTCCTATGAAATTACACGAGGGCATACTCACAGTGATGGCTCCTCTCACCAGCCCTCTGGTAGTACTGGCTGTGGTAAATCCATCAAAAGTACTTTCTGCATGGTATATTTCCCTTTTAATGGCCTTTATTGTAATCACCCTTCCTTTTATTTCTCATATACTGTTCCCTGTAAGGTTTCGCCTCAGTTTCCTTATCTTCTAGGACATCAGGGCCAGTGTAGTTGTGGGTGAGGTGGTAGGTGGAGCAGTTGCAATGAGCCCTGGAGCTGTGGGAACCTCACCAGAGCCCTCCTGGGGTGTAGACACTGCAAGTGTTTTGAACACACCTGGATGTGTAGGAGCAGAAGGAGGGGCCATGGAGCAGAAGGCCAGGTTGAGAACCTGAGCTGCAGGTGTGTTGGTCGGGTACTGGTCATCCAGTTATAGCTAAAGGCAAAAACTAGCACAGAAAGCGCACCCCCTGTGTCTCTTGCACAGAAATATGGCTCGGGTGTCCTCTTCTCTTGGGCTTTTAATTGCCTGCTTAAGGCCAAGCCCTTTGAACATAGAAAGCCATATTCTTAGTCCCTGTCTTTAAGGACCTTGCAGTCTTGTTCAGGAGATGAACTCGTTTTATACCAGGAGTGTTACACTGTAAAGGTCAGAAGCTCTGGAGGTGGGAGAGGTAGCAAAGGTCACTCTGGCTTGTGGCACACATCCTTCCTGGCCCAGTTTGTCAGTGTCATCCTACCAGACAGCCAGAGACTGGTTTCCTCACCTGATAGCTAGGAATGTTTAAACTTCAAAAAGAGACTGACCCAGTCCCATAGTGAGGAGCAGACAGCACTCTCCTGGCTCCGAGCCTCCGGAAGAAGAAGGACCAGTGGAAAGGGGCACTGGACCCCCATGAAAGGAAACCTTCCTTTTCAGCAGAAATAGACTGGTTAGTGGGAGTGTGAACGATGGAGTCTTTATCCCCTGACTGCCAGCTTCTGAAGAACTTCCAAGAATTGCTAAACCATCTGTGGTCAGTCTTTTTGGATGTAGTTTGTGCCTTCCCTCCCTTTCATTGTCCTGGTCATTGCATGTGTGGAGTGCCCTCTGCCCAGTGCTGTTGCAGGTGCTGGAGTCATCAGCTGTGAGCCTGTGAGAAGTTCTCCTGCAGGCTTGGGGCTAACAGCAAACATGCTAGGTTAATGCTGTGTGAGGGTATAAATAAGCACTTGAAGAAAGACAGAGCACTGGATGAGACACTGAGTGGATGGAGAGTGCTGGAAGCAGCTTGCTTTGTTAAGTAAGGAGCCAGGCGGGCTTTCTCCCAGAGCTCCCTTTGAGTATGTACCTGGGCAGAAGCAGCTTCTGTGGACGGTAGGACTCTGTTCTGCCTTTTCCCAGTTCTTTCTGTCCTTCTCTTGTGTCCCATCCCCTGGCTCTATCTCAGGCTGGCCTTGAACTCACTATGTAACTAAGGGGTTACGTTGAGTTTGTGGTCCTCCTGCCTCTCCTCAATATTCTTTATATTCATTGAGTTAAAACATTAAACAGCCTCAGATGAGTGAACTGTTGTGGAGTTTGCTATGCTCCCCAAAAGCTGGGAATAACTGAGTGGAAAGGTGCTATGAAATTGTGCATGCGTATGGAATATGGATGGCTGCTGCAGTATAAAGAAGATAAGTCTTAGCCATAGGAATTGGCACCCAAATGGGAGATTCAGAAAGGACTCCTCAAATAATGCAGACTCTTGCCTTAGAGCCACAGCAGAGTGAAGAGAGGACTTGATGTGCTCTGGAATCAGAGACATCCTGGGAGCCAGTTTCTGTAGTTTGTAAACAGAGTGCTCTGCCTAGAGATGCAGAGATAACCCAGATAACAGTCTTGTCCTTAAACTTCCAGGGCTCTCACATCTGACCACATCTTGGTGTGTACCCAGCTCCTGGGTGGTGTCTTGACTGGTCAAACCTGTTCCCCTCACCACACCTATCTTTGATTGACTTTGTGTCTCTTTCATTTCACAAGGGGATTAGAAAGTAGCACAGTTAATCATTCAGATAAGAACTCAGCAACCTGCTGCCTCCTGTATATTCAGAGGTACTATAGGGTAATAGAGAAGATACCTCTGGCCCCTCTCCCTTGCTGCTGCCTGCCTTAAGGAGTGCCAGCTCATGTCCCAGAGTACAGAAGGCCTTCACATGTTGCAAATTGGTATCAGGACCTGGTAGTTACTTTTACTGCAGACCTCGTACACTGCTGGCTGGCTTCATTTGTATTTACTTCAGCCTTCAGAGAACCTTGAGCAGTACTTGTGTTTAGTAGACCGGTCATACAGGGAATAAGAAAGGCTAATTAACTACTCTGGGCATACAGTACAATTTTCTTTCAGTTCTAAATTTGGAACTATTTCTGAAAAGTCATATTAAATGAAAATAAAGGTTTAAAATGTATTCCCCATTTAATTCCCAATATATTCCCATGTAATTCTTAACTTATTAGATAATGCAATTTTAGACCCATAAAATAATTTATAGTTCAAACCACAACAAAAACCCTTTAGAAAATATATGATTGTTAGCTCTTGAAACAGTTAAGGTTTTGAACTTGGACAAATGATGTCATGGAATTGTACACAGTTCACAGGCATTCTGGCAAGAGCACAACATAAGGACTGGGGAGGCAGGGAAATGGAGAGCCAGGCTTTGCTCTGGGGAACTGTTGGCAGGCCTCTCAGGCCCAGTGAAGAAGGGGGCCTTCACCAGCGTACCAGGATGCATTTGTCAACAGAAGTTGCCTGTGAGGTTCATGACCACTCCAAGGACTGGTTGGTCACCAGTGATAGCTTCTGTAACCTGTTCTCGCTGTCTAGAGGGAGAGCAGGGTCTGAGCAGCCTTAAACATTCTACTTGGAAGGGTGGAGCCGCTCTCTCCACAGCACCTCAGGCTCAGGCCTCAGTCTACCTGTTGCACTTCAGTAGGCCAGGAGAATTTCCTGTCTGCTGTTTTAGGTCTTGTAAGAGGTTCTGTCAAGATTTTTGTTCCACTTAGAGTTGAAGTACTTCTTACGGTTCCCTTTATTTACAGTAAGGCCTTTTTCCTGTACAACAAAAAACTTTAGATTTTTTTTTTTAACTCACCAATCTAAAGGCACTAGGTATGTAGTGCTTCAATAATTCTTAAAATTTTCTATTCTGAAGGTTTATAAACATGCTCTGTGTTTGGCTTCATCTAAACAG
Seq C2 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAAAAGCAGAGCTGGTGGGAAAAAGCTTTGTACTCTCCCCTTTTCCCCACGTCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190-D5Ertd579e:NM_001081232:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(85.6=100)
A:
NA
C2:
PF153761=DUF4603=PD(2.7=91.9)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: