RnoINT0083290 @ rn6
Intron Retention
Gene
ENSRNOG00000027623 | LOC680039
Description
hypothetical protein LOC680039 [Source:RGD Symbol;Acc:1596848]
Coordinates
chr14:79309847-79318481:+
Coord C1 exon
chr14:79309847-79313144
Coord A exon
chr14:79313145-79318372
Coord C2 exon
chr14:79318373-79318481
Length
5228 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
GTTTGGCTTCATCTAAACAGTTT
3' ss Score
6.1
Exon sequences
Seq C1 exon
GTACTATGAAGCATTTCCACCACTTTCTGAGAAGCCAGTTTGCCTGCAAGAGATCATGACCGTGTGGAACAAGTCCAAACCCTGTTCTTACTCTAGCTCCTCTTCATCATCCACAGTCCCACCAGCAAGCACAGATCCATCTTCTCCAAAAGACTGCAACAGTGAGAGCGAAGCCGTCAGAGAGAGAAGCAGTGCCGCCTCCATCCTCACACACGAGAAAGCCCAGAGCAGAAGCAGACACGAGGAGAACAAGTTGAGCCACAGCACCATCGAAGAAAAGCCTGCCTTGTACAAAAAGCAGATCCGACACAAACCTGAAGGGAAGATTCGCCCTCGCTCATGGTCATCTGGCTCTAGTGAAGCAGGCTCAAGTTCAAGTGGTAATCAGGGAGAATTAAAAGCATCCATGAAGTATGTTAAAGTCAGACACAAGGCACGAGAAATTCGAAACAAAAAAGGGCGGAATGGGCAAAGCAGGCAGTCACTGAAGCATTGCGGGAAGGCAGAGAGAGGAGTCCATGCAGGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAATGGGTCCATCAGGCAGCTGTGCAAGCGGGGTAAGAGACCAGCAAAGGAGACAGGAAGGAGCGACTCTGGGAACACTGCAGTGAAAGACCTGTATGTGGAGAGCAGGAGCAACAAAGAGTACAAGGAGGAGCCACTGTGGTACACAGAGCCCATTGCTGAGTATTTTGTTCCTTTGAGTAGAAAAAGCAAGCTAGAGACCACATACCGGAACAGGGAAGACACAAGTGCTCTGACAGCAGAGGCTGTGGAAGACTTGTCTGACTCTGTGCGTGGTCTGTGTATCAGCAACAGTAATATCCATAGAACATACCTCGCAGCAGGCACTTTCATTGATGGTCATTTTGTAGAAATGCCTGCAGTTATAAACGAGGATATTGACCTCGCTGGGACCTCATTATGTTCTCTACCAGAGGACAATAAATATCTGGATGATATTCATCTATCAGAACTAACACACTTCTATGAAGTGGATATTGATCAATCCATGTTGGATCCTGGTGCCTCAGAAACAATGCAAGGAGAAAGTCGGATTTTGAATATGATTCGACAAAAAAGCAAGGAGAATACAGATTTTGAGGCAGAATGTTGCATAGTGTTAGATGGTATGGAGTTGCAAGGGGAACGTGCAATATGGACAGATTCTACCAGCCCTGTGGGTGCTGAGGGCTTCTTCCTGCAAGACCTTGGCAATCTGGCTCAGTTTTGGGAGTGTTGTTCATCTAGTTCTGGTGATGCTGATGGAGAGAGTTTTGGAGGAGACTCTCCAGTTAGACTCTCTCCTATCTTGGACAGCACGATACTCAGTTCACACATGCTTGCTGGCAATCAAGAGCCCTTTTCCAATATTAATGAAGGATCTGGTATAAACTCTTGTTTTTCAGTATTTGAAGTGCAATGCAGTAACTCTGTTTTACCATTTTCTTTTGAAACACTCAACTTGGGAAGTGAACATACAGATTCTAGTGCTAATATGCTGGGGAAAACACAGTCTAGATTGCTAATATGGACCAAAAATAGTGCCTTTGAAGAAAACGAACACTGTTCTAATCTTTCAACAAGAACTTGTAGTCCATGGTCCCATTCAGAAGAAGCTCGCTCGGACAACGAGACGCTAAACCTTCAGTTTGAAGAATCGACACAGTTTACTGCAGAAGATATTAATTATGTGGTTCCCAGAGTCTCGTCAGATTTTGTAGATGAAGAACTTCTAGATTTTTTGCAGGATGAAACTTGCCAGCAAAACAGTAGAACTTTAGGAGAAATTCCTACATTAGTTTTCAAAAAAAGATCGAAGCTAGAATCTGTGTGTGGTATTCAGCTAGAACAAAAGGCAGAAAGCAAGAACTTTGAAACTACACAAGCATGTGGTGAAAGCAGTCCACATGGAGATGGCTACAGCTCAGGGGTTATTAAAGACATTTGGACAAAGATGGTGGGTAGGAGTTCTGTGGCTGCAGCAGAGACAGAGCGAGCTGGGGAGGAGTTGTTTTCCACAGACGTAAGTAACTACTGCTGCTGTTTGGACACGGAGGCGAAGATGGAAACCCTTCAGGAGCCCAGTAGGGCTGTGCAGAGATCAGAGTATCATCTCTGGGAGGGACAGAAGGAGAATGTGGAGAAAAGAGCATTTGTCTCTAGTGAGCTGTCCAAGGTGGATGGTGGTGACTACACCACACCCTCTAAACCTTGGGATGTAGCCCAAGATAAAGAGAACACATTCATTCTTGGAGGAGTTTATGGAGAGCTCAAAACGTTCAACAGCGATGGGGAGTGGGCAGTTGTACCACCTGGTCACACAAAAGGGAGCTTGCTACAGTGTGCAGCCTCTGATGTGGTGACAATCGCTGGTACAGATGTCTTTATGACCCCTGGAAACAGCTTTGCTCCTGGTCACAGGCAGCTCTGGAAGCCCTTTGTGTCATTTGAACAGAATGACATGCCGAAGAGCGGGGAAAATGGATTAAACAAGGGGTTTTCTTTTATCTTCCATGAAGACTTGCTAGGAGCCTGCAGTAACTTTCAAGTTGAAGATCCTGGGCTTGAATACTCATTCTCTTCCTTCGACCTAAGCAATCCCTTCTCACAAGTTCTCCATGTAGAGTGCTCATTTGAACCAGAAGGGATTGCGTCTTTTAGCCCTAGTTTCAAGCCGAAATCAATCCTCTGCTCTGATTCAGACAGTGAGGTTTTTCACCCCAGAATATGTGGTGTCGACAGGACACAGTACAGGGCTATTCGAATCTCTCCTCGGACTCACTTTCGCCCAATTTCTGCATCTGAACTCTCCCCTGCAGGAGGAAGTGAGTCAGAATTCGAATCTGAAAAAGATGAAGCAAATATTCCCATTCCTTCTCAAGTTGATGTATTTGAAGACCCACAAGCAGATCTCAAACCTTTAGAAGAAGATGCAGAGAAAGAAGGTCACTACTATGGAAAGTTAGAGCTCGAGTCTGGGAAGTTCCTTCCTAGGTTAAAAAAATCTGGAATGGAGAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAGGCAGCAGGGATCCTGCCAGTGGGAAAACAAAGTCAGTGTTTGGAATGTAACTTTAATGAATCTCTGGGAATAAACTTAGAGAGCTCCACAGCAAACTGTAAAATAATGACACAATGTGAAGAGGAAATGAATGGTTTTTGCAGTTGCAAAGCAGGTTGTCAGTTCCCTGCTTGTGAAGATAATCCAGTTTCTTCAGGACAATTGGAAGAG
Seq A exon
GTATGTGTCAGTATTGAATAAGGGGTTTGATCAGACCTTAATGAAAGGCAGCCTTATCACGCAAGAAAAGTGAGGCTGAATTACTGGGAAATTAATTTAAAAATATTAGAACTTAATTCTTAGTTTACATTTAAGAACTTAAAATGGATTTGCTGTTTACAGATTTGAAGTAAATGATTGACCCTGCATGAAAAAAAAAACATAATAACTCTCAGGATATGAAGTTCTTATGTAAAATGCGTGTAGTGTGGATAAAACATAAGGCCTGTATGTAAGCATTTTATCTCTCAGAGTCAGGGAGCCAGAATGTAGCTGTGAGTAAAGAATGTTGATCAGTTTTATTATAGTTGTGTATTCCATGTAAAGAGCTTTACATCTGGACACCATGCTCTAAAGTGTGTTGTGGTTCTTATTTAAAGTGACCAAGTGAAGGGAAATCTGTTCTCGGTGCTCAGCGAGAAAGGACTCTGGGTGGGAGTTCCGTGTGGAATCACTAGGTGATGTTAGTGTCAGCACTTTTGTTAATGGAGTCATTGTTCCCTTTGAGTGTGTGTGTTTCTAGGAAGTCCCTTGAAGTTAAATTGGATGCACCAGGATGGACCCAGCAGTAGGCTGTTCCATGGAACAAAGCAGAGCTGCCTGTCCACTTTATCCGATGCTTAGTTGACATAGCAGTGCCTGGCTTTTTTCCAGAAGCAGGTTGTTAAACAGTGTTGGAGGCAGTCTCAAGTCCTAACCACCTGATGGAGGTGGATATGTGTTGTCCTTCCTCTCATCTGTCCTGCTTACTGGCTCCCCCCATTCTGTGAGGTTTTCAGATCTAACTCCTTCACTGATACCTCCCTAAATCCTGTTCAGTCCTCATCCCACCTCATATCAGAATTAGTTTCTACCTTTTCTTAATTTATCTGCACTCTCAGCCTCTTTTTGTAATTGCATTTTCCATCTCATGAGTTCCTTGCCTTTTGCTTTTTTCTTTGAGGGAAGAGGGTGGTACTTGACTATTGGCTTCTATAACTGGGCACTGGGCACTGACTCATCAGAGGCAGAGCCCCTGGAAGTGCAACTGCTTGCCTTTGAATAGTTGCAAAAGCCTCAGGGGAACTTGAGGATTGCTGCTCTAGTTAGCATGCTCTTTGGTCTATGAAAGGCCAAGTTTAACCCCATCGGATCCCTGAAATCTGAACTGTTAAGGAAAGCCCAGCAATATTGTTAGCCTTTATGTGCTGTTGTGTTGCCCCCATTTTCCTCCTTAAATGTTCCTTTATGTACTTTGTATTTCACCTGGTTCCAGATTGGGAAGAAAGAAAATGAGGAAAGAAGCAAGAGTCTACCTACTACTACCATATTCCTTCGCTTTCTAGTATGTTGATGTACCTCCGTGTTCTCAGATTTGGGTTTTGGTTTTGTTTTGTTTGTTTTTTGTATTTTTTTTTTTGAGAGGTTTAGCTTGCTGCAGACTTATGGGGACACCATGAGAGTATGGGTGCTGTCATGCTGTCAGTGTCACTGCAGGTTGGAGCTCACTTCATATAGCTGGCTTGAGGAACAGAGTTGACAGTGGCTTGAAGGAACAGTGCGGAACCAGGCTGAGGCTAGGACCTGTGTCTATCTACCCATTGTAATCCCCAGGTCAGTTATGAGGAGTGCCTAAGACTGGCTCCACTTAGGCCAAGGCCGCCTTCTTCCATGCAAGAGAATGAAAGTAGAGGATTTTCCTTAGAATTAGCAGTTAGGACCATGGAAAGAATAGGGTTTACTTAAAAGTTGAGTCAAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAGGCGCAAGGCCCTGGGTTCGTTCTTCAGCTCCAGGAAAAAAACAAAACAAAACAAAACAAAACAAAAGTTGAGTCAAATTGGGCAGACATGATTTGAATGCTTATTATGTGCCTGTCACTAAGGGAAGAGCCTTACTGTGTGGGGTGCCATCCTTGTCAGTGAGAAGTTTTAGTGTGGGCAAGAAGGCCAGTTTGTGAATTGGAAATGGGCTGTTCATATGAAGTTACAGGAGGCATACACACAGCGATGGCTCTTCCCACCGTTGTGGTAAACCCTGCCAAAAGTATTCTCTACGTGACATATTTCCCTTGTAACTGAAATGGCCTTTATTGTAATCACCTTGCCTTTTATTTCTTATGTACTGTTCCATGTATGGTTTCACAACAGTGTACTTGACCAGTTCCTTATCTTTTAGGACATCGGGGCCAGTGTAGTTGTGGGTGATGCGGTAGGTGGAGCAGTTGAAATGAGCCCTGACGGCTGTGGGAAGGGACGGTGCAGGTGTTTTGAGCTCACCTGGACGTGTAGGCGCGGAAGGAGTTGAGGCAGACCGTGTGAGCAGGCCAGGCGGAGAGCCTGCCCTGCAGAGCTGTGCGGTTGAGTACTGAGAACAGCTCACCCAGTGATAGCTAAAGGCAAGAACTAGCACAGAAATATGCGTGTCCTCTTCTCTTGGGCAAGTAAAAACTTGCTTGCTTAATGCCAAGCCCTTTGAACATAGAAAACCAGATTCTTACTCCCTGTCTGTAAGGACTTTCCAGGAGATAAGCTTTTTGTCCCAGGATATTACACTGTGATGGTCAGCAACCCTGGAGGTTGGAGAGGTAGTAAAGGTCATTCTGGCTTGTGGCACACATCCTTCCTGTACCATTTGTCAGTGTTGTCCTACCAGAGAGCCACAGAGACTGATGTCCTCACCTGATAGCTAGAAATATGTAGACTTCACAAAGAGACTGACCCTGTCCCAACGTGAGGATCAGACAGCTCTCTGCTGGCTCTACGCCCCCAAAAGTGGAGAGCAGCAGCAGGCCCTTCCGTCTCCAGTGGCTCCTCTGATCTGCACTACATGTCTTTAAAAGAGAAGGCCACAGAACACTTTCTCTGTCATCTGTGACCCAGTGATGAAGAAGGACCAGTGGGAAAGGGCCACCGGGCCTCAGCACCTTCCTTTTCAGCAGAAATAGACTCTTTAGTGGGAGTGTGAACTGTAGAGCTTTATCCCTCGACTGCTAGCTTCTGAAGAACTTCCAAAAATTGCTAAAACATGTGTGGTCAGTCTTTCTGGATGGAGCTTGTGCCTTCCCTCCCTTTTCATTGTCCTGGTCATTCATTGCATGTTTGGAGTTCCCTCTGCCCAGTGCTGTTGCAGGTGCTGGAATCATTAGCTACGAGCCTGTGTGGAGTTTTCCTGTAGGCTTGAGGCTAACAGCAAGCATGCTAGGTTAATCCATGTGAGGATATAAGCAGCATTTGAAGCAAGGCAGAGTATTGGATGAGGCACTGAGTGAATGGAGAGTGCTGGAAGCAGCTTGCTCTTGTTGAGTAAGGAGCCAGGCAGGCTTTCTCCCAGAGCCCTCCTTGAGTATGTGCCTGGGCAGGAGCAGCTTCTGTGGATGGATGTTCTGCCTTTTCCTAGTTCTCCTGTTCTTCCGGTGTGTGCCATCCCCTGGGTCCATCTCAGGCTGGTCTTCAACTCACTCTGTAACTAAGGGGTGATCCTCCTGCCTCTCCCTCTCAGTATTCTTTATATTCATTGAATTAAAACATTAAACAGCCTCAGATGAGTGAACTGTTGTGGAGTTTGCTGGAAATAACTGAGTGCATGGTGTCATGAAATGTACATATTGTGGAATACGGATGGCTGCTGCAGTATAAAACAGATAGGAAGTCTTAGCCATAGGAATTGGCACCAAGTGGGGGATTCAGAAAAGACTCCTCAGATAATGCGGACTCAGACAAGAGTCACAGCAGGGTGAAGAGAGGACTTGATGTGCTGTGGAATCAGAGACATCCTGGGAGCCAGGTTCTGTAGTTTGTAGACAGAGTGCTCTGCCGAGAGATGCAGAGACATCCCAGGTAACAGTCTTGTCCTTAAGCTTCCAGGGCTCTCACATCTGACTACATCTTGGTGTGTACCCAGTTCCTTCTTAACTGGCCAGACCTGTTTCCCTCACCGCACCTGTCCTTGGTTGACTCTGTATCTCTTTCACTTCACAAGGGGATTGGACAATACTAAGTAGTACAGTTAATCACACAGATAAGAACTCAGCAACCTGCTGCCTCCTGTCTCCTCAGAATTCTATGGGATGATAGAGAAGACTGACCCCTCTGCCTTACTGCTCTAAGTAGTACCAGCTCGAGTCCCAGAGTTCATTAGGCCTTCACATGTTGTAAAGTGGTATCAGGACCTGGTCCCCACTTCTCCCGCAGCCTTTGTACACTGCAGCCTTCATTTGCCTTTAGCTGAGCCTTCAGAGGACCTTGTGCAGAACTTGTGCTGTTCGTAGACCACACGGGGAATAAGAAAGGTTAACTGACTACTCTGGGCAGACAGCACAATTTTCTTTCAGTTCTAAATTTGGAACTATTTCTAAAAAGTCATATTGCCTATTTAATGCCCAATATATGTCGATCTAATCCTTGAAAACTTACTAGATGATGCCGTTTTAGACCCATACAATAATTTACAGTTCAAACCACAACAAAACCCCTTTAGAAAATAAATGGTTGTTAGCTCTTGAAACAGTTTGGGTTTTGAACTTGCACAAGTGATGTCATGGAATTGTACACAGTTTGCATTCTTGCATTCTGGCAAGAGCATAGCATAAGGGCTCACGAGGTAGAGAAATGTGGAGAGCCCAGGCTTTGCCCTGGGGAGCTGGTGGCAGGCCTCTCAGGCCCAGGGAAGAAGGGGGCCACCACCAGCATACCAGGATATATTTGTCAACAAATGTTGCCTGTGAGGTTCATGACCATTCCAAGGACTTGTTGGTCACCAGTGACAGCTTCTGATAACCCATTCATTTTTACTGTGTAGGAGGGAGAGCAGGGTCTGAGCAGCCTTGAACATTCTACTTGCAAGGGTGGAACCTGTCTCTCCACGGCACCTCAGGCTCAGGCCTGGGTCACTGTTGTGCTTCAGTAGTTGAGGATTTCCTGGCTGCTGCTTTAGGTCTTAGAAGACATTTTTGTCAAGATTTTGTTCTACTTGGAGTTGAAGTACTTCTTAAGAAGGTTTCATTTATTTACAGTAAGGCCTTTTTCCTTTGCCTTATCCTGAACAATGGGAAACTTTAAATAGATTTTTTTAAACTCACCAACCTAAAGTCACTAGGTATCTAGTGCTTCAGCTTTCTGTCTGTCCTGAGGGTTTGTAAACATGCTCTATGTTTGGCTTCATCTAAACAG
Seq C2 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAGAAGCAGAGCTGGTGGGAAAAGGCTTTGTACTCTCCCCTTTTTCCCACGTCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027623:ENSRNOT00000029191:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=0.180
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(85.6=100)
A:
NA
C2:
PF153761=DUF4603=PD(2.6=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]