DreINT0179592 @ danRer10
Intron Retention
Gene
ENSDARG00000069957 | zgc:162936
Description
zgc:162936 [Source:ZFIN;Acc:ZDB-GENE-030131-5253]
Coordinates
chr15:965722-969170:-
Coord C1 exon
chr15:969012-969170
Coord A exon
chr15:966902-969011
Coord C2 exon
chr15:965722-966901
Length
2110 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ATTTGTTACTTGTTTTTTAGACC
3' ss Score
8.23
Exon sequences
Seq C1 exon
TGTCTAAAAACACAAACTCCTGAAGCGACTGAGGTATAAAGATGGCGTTTATTAAAGTGGAGAGTGAAGATATGATGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAAGCTTTCAGAGTCAAACATGAAGATCCTGAGGAACAAACAG
Seq A exon
GTTGGTCATTTAATCTTTTATATATATATATATATATATATATATATATATAATTAAATTTTACAGCTCAACTAAAATGAATGATACATATGAAAACCGCGACTGACCTTTGAGTCTGCATGAAGTCAAAATTTACTCTTCTTATTTTCTACATGTATTAGTAGTGTGTTTGTTATAAGCCCACACTGAATCTGCGCACACAGAAATCTGTAGATTTTTACTTTTGATTTTTTTTTCTTGTATTTACTTGTTAATTTATATTTATTTAATTTTTGAATGAATTTCACTAACATAATTGTGATTATAATAACCGCAATATTTAAATATTCATATGCTTTATTTACAATACAGTTTGTAAAGTCATTTTCTGTCTTTTAGTAGTTATACTATATAGGAGACTTGCTTTGTTTTCCAATTAAGTGGGTCTAATTGGATTTGCATCGTAAATCGAGGTGTGAACCTACGCTGGTCTCACTGTTCAGTTGTGATTATCATGCCATCCATTCGGTGAGTCCAGCTGCGCTCTCATAGCAGGAAAATGGGGAAAAAAATTAATTACTGCACTTTTATAAACACAGCACTGATGACTCGTATCTCCAAACAATTCTTCTTCTCCCATTTGTTTTGGCAACACAACGTGTCGTCTCTCTGCCGTCTGAACACTGTTACAGGTTTTTGAAGCTATCATGCATATTAATGAAGTTCACCTCATACAAAATCGAGTGCGCTGATTGGTTTGAGTGAAGTCTTTCTTCTGAAATAATGCTGCAGACTCACAGACGTTACAAAGTACTCCCAGATACAGACAGCCAGTCTACATGCTAGAATACACGCAAGCATCTATTCGGCGTGACGCTGCTCCAAAAATTCTTTTCTAATCCGAAAGAACGAATTTGCTTGAAATAATGCCAAAACAACTAATTTTCACTTTTTTGTGTAATATACGTTTCCTAATAGTGTTAATAGCAGCATGGGACACTTGTATCACTGTCAACAGCTCAGAAAATGTGTTTTGGTTTTTTGTGACCCTTTAAAATGGGGCTTTGTTTTATTCTCCTGGCTTGTGAATGTGTTAATGACGTTTTTCTCTAAACCAATGGTGTTCAGCTGCGTGTCTAGCTCCGCATTTTTGGTACCCTTTTGTTGTGCTAGGTACCCTTTCAAATAGGTAGCCAAAAACTGGTACTGTACGGTTCGCTTTTAGGTACCTTTTGGCAGTGGAAACAGCCATGAAATCGTACCAAACCATGTCACTCATTGGAAATGGGCCATCATAAAGGAAAGGCATTTATCTTGGCTGATGTTGAAATGTTCTACTGCACAGTAGGCTTGGGCGGTAATATGGTATACCGCAGGATCTAAAAATAGCAACGGTGTCAGTTTCAATACCGTCATAAAAAACAATGCACCTGAATAGGCAGTGTGGAGGGCAGTGTGGAGGAGAGAGGTGAGGTAAGCTGGCGAGTCGCGCACCAAGTAATCTGCAGTATTTCCGGTTTCGATCGAACGAGAAGGGAGACGTGGTAAATACCAACTAGAGGTCTGCATTCACGCTGCTGTACCGCGGGAGCTGACCAGATTTCTTGCGGTGCGGGAATTAATTTCAGAGTAAAGCACGGTAGCGGTCGGTAACTCTGGTGTTATTTGAATCTGAACGAATGGGGCTAACAATATCGCTCCCGAGCGTGCGCGTGCGCATCCACGTGGATTGTGTGTGTGTGTGTGTGAATGAGTGCATGTTGCTGTGTGTCGCTTGGTGCTCTGTCTGACTGACTGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGAGAGTTTGGTGATGCTGTTTGAGCCTTACATCATACTTTCTTTTATTATGCACGGTAATACCGGATACTGAGGTAAAATAGGGAGGAGGTTTGACCGTATCAAAATATCAAAAGCCTACTGCTTATTACTGTTATTAAGACATTAATGAAAGATTCAAGACTGATGCATCAACCCAATGTTGGCTTGTTTCCTGCTTTGACTTGTTAAACGGCTGTTTAACTTTTTTTTTTTATTTGTTACTTGTTTTTTAG
Seq C2 exon
ACCTGGTGGGACTCAAAGAAGAGGAAGAAGAATTGAATGACATGGAGGGGAAAGAGCAATGTGTGAAACATCAAGACTTTGTGAATGTAGAACAGTTTATTAAGATCGAACCGACTTCATCAGGAAAAACAGATCAGAAAAACAAACCTAATCAGCTGTTCATCTGCCAACAGTGTGGAAGAGCTTTCAGTCGGAAGTATAAACTGAAGAATCACATGACGATCCACACTGGAGAGAAGCCTTTCACCTGTGAGCAGTGTGGGAAGAGCTTCAATTACAAGGAAAACCTTAATTACCACATGAGAGTTCACACCGGAGAGAGGCCGTTCTCCTGTAAGGAGTGTGGAAAGAGTTTCGTTCACAAAGCAGCTCTTAAATACCACACCAGAGTTCACACCGGAGAGAAGCCCTTCACCTGTGAACTGTGTGGAAAGAGCTACGTTCACAAGGGAAACCTTAATTACCATAAGAGAGGTCATACTGGAGAGAGGCCGTTCACCTGCGAGCAGTGTGGAAAGAGTTTCGTTCAGAAACACAAGCTTAATAACCACATCTTAAGCCACACTGGAGAGAAACCCTTCAAATGCCTGCAGTGTGGAACCGGTTTCAGTTGCAAAGCAAACCTTCACACCCACATGAAAGTCCATTCTGGAGAGAAGCCGTTCACGTGCCAGCAGTGTGGGAAGAGTTACACCAAAAAAAGCAACCTTAAAAAGCACATGAACGTCCACACTGGGGAGAACCTGTTCAGATGCGAGCGGTGCGGGCAGAGCTTCAGATATAAACATTCATTGGATTCTCATATACAAAAGAGAGAGCTCAGCGGAGGGAACTGTCTTATTAAATACACTGCAGAAAAGCCTTACGCGTGCCAGCTGTGTGATAAGAGCTATAAAAACAAAACACACTTTGATTCCCACATGAAAATACACGCTGGAGAGAAACCGTTCCCCTGTGATCAGTGTGGAGGGAGCTTCAGCAATAAAGCAGCCCTTGGCTCACACATGAAGGTTCACATTGGTGAGTCCTCACACTCGGTAAATGCACAGAAATCTGTTGATCACTAATGACAAGTGATTCGATTGTGATTTGAGAAGGGATTCGATTGGTTGAGGGTTTTTATCCATGCATTGCATGCACACAGTCTATAATTAAACAATACAGTCAAACAACCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069957:ENSDART00000106627:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF051298=Elf1=WD(100=19.4),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF051298=Elf1=WD(100=17.7),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]