MmuINT0179974 @ mm10
Intron Retention
Gene
ENSMUSG00000046185 | Zfp84
Description
zinc finger protein 84 [Source:MGI Symbol;Acc:MGI:107780]
Coordinates
chr7:29775905-29779821:+
Coord C1 exon
chr7:29775905-29775991
Coord A exon
chr7:29775992-29776131
Coord C2 exon
chr7:29776132-29779821
Length
140 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGAACTTACTTTCTTTCAGATC
3' ss Score
10.21
Exon sequences
Seq C1 exon
GACTTGCCATTTCTAAGCCATCAATAATTTCACTGCTGGAGCAAGGCAAAGAGCCCTGGATAGTGGAGCAAGCAGGATGGTGCCCAG
Seq A exon
GTGAGGAAAGACGACTGCACATGGTGCGCAGATAAATACGTAGGCGAAACACTGATGCGTGTTAAATAGTGAGGAAGCACATGGTTCTGTTTGTCTGGTGCCCCGTGTCTGCTCGCGCTGATGAACTTACTTTCTTTCAG
Seq C2 exon
ATCTGCTGTCTGTAAATGAAGCTAAGAGTTTGTCTCTAAAGAATGGCATCTTTGGAAAGGAATCGTTAAAATGGAAAATAATAGAAAGAGTTGGTAGTTCTTGCCTTGAGGAATCTTGTTTTGGAGATGATTGGAAATGCAAGGGACTCCTTGAGACAAAACGGGAATCTACAGAGGAATATTTACAGGGAGTGACAGACCCGTTGGAAGAGACGTCAGCCAGATTCGTTCAGCCTGCACCCATTGCTCTGAGTGAAGTGACGCATTCCGAAACGAAACTCTCTGAGCAGGACGCAGGCGAAACCATCACTCAACAGGTGCGAATTCCTACCAGTGACAAACTTAATGAAATGTACGAGAATGCCTTTATCTATTACACAGGTGAGATGAAGCGTCAGCAGGACTTTGCTGGGGACAGATGTGATGAGCTAAAGGCGTGCAGCAGAGGATTCGCCTATGACTTTCAGCTCGCCCCGTATCAGATCAACAAGAAGCCCTACCAGTGCGAGATCTGTGGCAAGATCTTTGAGAAGCACGCTTACCTTGTTCAGCATAACCGCTTTCACACGGGGGAGAAACCCTGCGAATGTAAGGAGTGCGGGAAAGCCTTCACCAACTGCTCGCTGCTCGTCCAGCACCAGAGGGTCCACACGGACGAGAAGCCCTACGAGTGCAAGCACTGTGGGAAGGCCTTCCTCTACTTCTCCACGTTTTTTCAGCATCAGAGAACCCACACCAACGAGAAGCCATACGAATGCCACAAATGTCAGAAGGCCTTTAACAAGAGTGCCAACCTCACTAGACATCAAAGGATCCACAGCGGCGAGAAACCCTACGAGTGTAACTTATGCGGAAAGACCTTCACTTGGGCTTCCAACCTGAATGATCACCAAAAGATTCACACCGGCGAAAAACCTTACGAGTGTAACTACTGCGAAAAGGCCTTTCTCTGCCATTCGGCCTTCATGAAACACTATAGAACTCACACAAACGAGAAGCCCTACGAGTGCCAGGAGTGTATGAAGGCCTTCCGGCAGAAAGCCCATCTCATCCAGCATCAGCGAGTCCACACTGGCGAAAAACCTTACGAATGTAAGGAGTGTGGGAAGGCCTTCGCGTGTCCTTCCTACTTTAACAGACACCAGAGGATTCACACTGGAGAGAGGCCTTATGAGTGTAAAGAGTGTGGGAAGGCTTTCATTGATTGTAAAACTCTCATTCTGCACCAGAGGATCCACACTGGCGAGAAGCCCTTCCAGTGCCAGCAGTGTAGCAAGGCCTTCAGGCAGAGGTCCCACCTGACGCAGCATCAGAGGATCCACACTGGCGAGAAGCCCTACGAGTGTAAGGAGTGCGGGCAGGCCTTCACTCGGCTCTTACAGGTGAAGAAACACCAGAGAGTCCACACGGTGGGGGAAATCCTGTGTATCTGAACACTGCCCTCTATTTACTGAAAATCCCTGACTCAGCATCTTCACAACCACACAGAAGATAAACATTAATGACTCGGAAATGCGGGAAACACCTTTATGTGTCCCTCAGCTATGCAGACTGCTGGAAAAGCCTTCTGGAAGGGAAGGGTGTGAAACAACCTCTCAGACTGTGCTTCACGTTGTGCAATTTATACTATGCTCAAAATAGGAAGCTCTCCTTATTTTCGGCTATTCGTTATGGAATAGAGTTTGTCAGAGAGAACCATCTGATGACTATTCTATTTTTTTTTTTTGCTTTCTTCTTTTTTGTTTTTTGTTTTTTTGCTTTATAACCTACTGTTTATTGAGTATTAATTCACATAGGAAAAATAAAAATTAAATTATGAATAGAAATACTAATTCTATTACCAGTAGAAGGGTTCTATTTAAGTATAGTTATAGACAGTACCACATAGAGAACAATGGTGTGCATGCTGTTAGTGTAGGGGTTTCACATGCATCGATTGCTGACTGTGTTTTATTAAGTTGACTTCAGCCCTGCTTCAGATTGCTGCCTTTTAGCTGGGAGGATGGTTATTTTGGGGACGGGATGAATCAGTAAATGGGGTCTTTGGCATAGCTGCTAGACAGGATCAGGAAGGATTCGGAACCGTCCTCTTATGATGTTCTTTGTTACTATTTTTGGAACATTCATACCCACTTTATTCATGACATCGCCTGTCAGTGCTTGTCCCATGCCAAAGCCTTCAAAAGGAGTTCCGGCGTGACAGTGATTGGAACGGAACACGAGCAGATTTCCACTTCGACTTGAGTTGAGTCTGAAAGCCGACCCTAGCAAGGCCACATGGACTCACTGCTCAGGGTGCCCGGCACAGCAGAGGACAGTCGGATCTGTGCAGGACAAGAATTGGAACAAACTCATAATCTGTCACCGTCACCAGGTGACTCTCAGTCATGTGAAAAGTGCAGTCTGAAAATACAGCTTGCTTCAGTGTGGAAGAACAACAGCTCTACACACTAAAGCCTGGCGTGGTTCATTTGAATAGATGTTGTCAAATTACACACCTTCCCCCCCCCCCCCAAAGAGCAATAAATCTTAGAGTTGACAGCAGAATTACACATTATATACAATAATCAATGAATTTAAAGAAGTTTCTAAAAACCATCAATAAAATGGATAACCGGACTTTAGGAGCTTTTTCCAAATCTGATACATAGACTAGGTTTTCGGGGGCCTAGAGGGACATTTGAAAGACACAAGCACAACCGTCAGAGCTAATGGGAAGTAGAGCATTCCCAGGCAGAAGTATGTTTGTTCGGTTGGCTTTGGTGGGTTTTATTTTAAGACATGGTCTTTCTTAAACTTGTGGCAATCCTCCTGCTTGAACCTACTGAGTGCTGGGATTAGAAGTGTGAGCTACCACACTGGCTTGAACTTGGAGCCTTGAGCCTGCTCAGCTTGGCTCTGCCCTAGAGCCTTTTATTCCCGGCTCTCTTTGTTCTGAGGCAGGCAGGGTCTTGGCTAAATGGCCTAGGCAGGCTTTGGTGCCCTTACATTAAGCCTCTCAAATAGCTGGGGCTATAGACCTCTGTTACCAGGTACAGACAGAAAGTTTGACTGCTATAAAATAAGGTATTCTCCAGATTTCAAAATCAGGCAGCAAGCAAAGGCAGTGAACATGGAATTTGCCAGTGGGAAATTGTGTGGTAGAATGGTCAACATAAATTGTATCAGTAACTCCAATAACCTTTTGAATAGGCTGATTGCTGTAGTTGAAAGGAAGTGTTTTTTAATTTTTTAAACAGATTTTTTTTCTTCAAAGGTTTATTTATTATATGTAAGCACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCCGATTTCATTACAGATGTTTGTGAGCCACCATGTGGTTTCTGGGATGTGAACTCAGGACCTCCTGAAGAGCAGTCAGTGCTCTTAACCGCTGAACCATCTCTCCAGCCCCCCCCCCCCCGAAAGGAAGCTTTTTTTCTCATTTAAATGGAATACTAGGTTGGTGTGGGTCATATCTGAAATTATCCCTGGCAAGGAACGATATTGCTGTGGCTTCAGATTAGCCTGAGGTCCATAGGACAGCCCCAGCTTAAAAGTGGGAAAGGGAAGACAGACAATGCTGCAGAAAGATCAAAACTGAGGGACGGGGGAAGCCCGTGCTGTTGAGATACTAACCAAAGGAGTTCAAGAAGAAACAACAAAAAACTGGTTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046185:ENSMUST00000032802:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAGTGGAGCAAGCAGGA
R:
TCTTCCAACGGGTCTGTCACT
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types