DreINT0181014 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21638864-21643500:-
Coord C1 exon
chr9:21642660-21643500
Coord A exon
chr9:21639150-21642659
Coord C2 exon
chr9:21638864-21639149
Length
3510 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATT
5' ss Score
5.99
3' ss Seq
ATCTTTTTGTCCTCCCTCAGATT
3' ss Score
10.86
Exon sequences
Seq C1 exon
GTGGTTGCCTAAGCAATGGATGGAGATTTGGAAGCCAGAGCAGATGTTGAGGAGGCATGTACAGTCACAGGGGAGGAGGAGGGTCAAATGGAAACCACGCCCGAAATAGAGCCGTCTCCATCTGCAGAAGAGTCACAGACAGCACCAGACCTGCCCACAGCCTCGGAAGACAATGATGACGATGTGGTATTGGTAGAAGAGCCTCCTGCTCACTCTCAGGGGAAAGTACAGCCCCCCATCTCCACACCTGCAGAAACCCTCGATGCTGCCAAAGACTGTGCGGAGTCGGCTACCACGGCAACAGCTCCCTCCAAATCTCCCAGTCCTCCCTCCTCTGCAGCTACCAGTGGCACAACTGCATCCACCACGGCCAAAAGCCAAAGCGAGCCAATCGTTATTGACGACGAGGAGGATTCAGAGCTCAAGGGCACCGCCTCTTCCTCCGTGCCGCCCCCTGAGGTGGAGGATGCCCTGAGCAGCACAGAGCCTGACTCTGAAATCCAAATTGCCAGTGTTACCACGCTGGGTACGGACTCTTCAGCGGTTGCCATGGATACGTCAACAGCATCGCCACTGGCGCTGTGTGCTCAAGAGGATATAAACCTCATGATCACGAATGTGACATCGCTGAAAGACGGGGATGGTCCAGCGGCGGCCCCTTTGGAGGAACTGGAGGGGGCTGAGAACGGACTGCAGATAAGCAGTGCATTCAGCCTGAACCCAGAGGCCCAGCAGAACCAGGGTACAACCGGCAGACCTTCACCCACGTTCAACCCAGGACGCATTAGTGCCGCGAGCCAGCCTGTGCAGAATGGAGAAACGGGGACACACCAGAGATCTG
Seq A exon
GTAATTCATCCACACTCAGCTGCTGTGTCATCCTCTACCAAGCACATGTACATAAGGCTTGCATTGACTTGTTTCTCTAATACTGACCTAACAATCCCAGGTTTCCATTTTCAGATATCAGTGCACCATTATCCGTAGTCCATGGAATAAAGGTGGAAGAGTGTTTACTAGGAAACAGTGCAAAACTAGAGATTACTAACTGCATCTTTCCTAATTTCAGTTTCATACAGAAGTAGTAACACACCTTTTTAACCATATTGTGACAGGGCTGCACGATTTAAAAAAAACCTAGCATTGTGATAGTTTTTTAGTTTGCAATATGAATACTATTTCACCACATAACTTGAATATCTATTTGTAAAGGATTTATAATGTTAGATCGATTGGCATGATTCTGCAACTCCAAATAATCTAATAAACATTCTATCAACTTTTTGGGGTCCCCTGACACATTTTCGTTGCAGTCTGTAGTATGTCAGGCATTGGCCGGTATAGAACAGTATGATAACCTTGGGTAAAAATGTCATGATATCATGGTATTGTAATTACTGCTCTAAATATCTTCTTTTAAAATGTCTGGGTAAAAAAAAACACTTTTAAAAACCATAAATGACAGCAAACATTGAATGAATTCTACTGTCTTAATTGACCCTTCGCTAAGCCCCCGCCTTCCTTAGTTACTGTTGTTATGCCTGTCAAGCTTTCGTGCCTGGAAAGTCTTATTACAATATGCATGCCCCAGTGTCAGACATTGCCAGGGATATAATTTGTCATTTTTGGCGAACAGGTGAGATATCCGAGAAAGCCAGACAAAAAAGAACTGCAGTATGCATTACCGGGGCGTATTCATGACTTAATAGGCAACTGATTAGAGAATAATTCCATCAAAATTGAAGCTACGTGAGCCTAGCCGCCTCATATGCTGACCATTCAACAGCTTAGTTCATGCACAGCTAGAGAGGTGAAATTTATCAATAATCTAATAATAACAAATTAAACCATGATTTCCTTTTTTAGCCAAAAAGCCTGATGGATTAATTGTTGTGCAATGAAATATAGCCTTACTAACCAACGAGGAAACACGCATGGACTGTGCTTCTACATAATTCATTGATAGAAAGAACAGCCATAAAAGGGAAATTGATGGATTTGTACCGAATATTAGTATCATTTACTCATAACAATGTACAGCACCTATAACTGTCAGTAAGTTTGTGCTTTTTATACTGTTTCTTTTGTAATTTGCAGTTAAGTGAAAAATAAATAAATTGAAATGCAAACAAAGTATAAATAGCAGAAGTGAACCTGATTTTCCCTACCAGCAAATATTAATCAGACACGAAATATAAAAGCAGACACTAACCTGCCATATCATCGTCACCAATGACTAAATCTCCAAAAGACAGCCGAAAACATCAGTGAATTGTAGCTCTGACATGGTCATGAGGGATATATATGATTGATAAACAGCTGCGGGTGAAGTATATTGATCACAAGTGCTCAGATTGTGATCACATCTCAGTTTTGTTCTGTTGATTTGTAATTTCAATTATTTGTAGCTTGAAACAGATGGAAATATGATTGCTATTAGTATGACTACTTTGGCGAGGGCTTTAACAGGGCAGTGCTCATATAATCGAGCAAAAAAATAGAAAAAGACAGCTGGGAAAAATAACCTGTTTTTGTATTTTTGTAGGAAACGCAGTTTAGATCTTTTAAGATGTGTGTGAGTTATTGTCGTCCATCACTGAATGTGTCAGGAAAATAGAAAACAAAACCAACTTATCTCCGCTCTTTTAGCACCCCTCACAGAGCTTGATCCACGCTGACATGTCTCCCATTTGGTTTTAGGTTTTGCAAAAGGAATAAAGCTCCACCACCCCGTCCAAACTTTTATGATACCGGTGTCAGATTTGCACAATCCATATGAACAGCGCTTTGGCTTGTTTCCCTTGCTCCAAAGCTTGACAGGCCTCCTGCACATAGCTAAGGTTGCTAAACCATGACTGGTGTGTGGCGGTTTTTGGGTGTGGCTTATTGAAGAACCAATTAGTTTCCGATTTCAGACACCGATTTCTTTTTTAACTTAAAAAAGGCATCTTTAGATATTTTTCTTTTCTTTGGAAAAGTTTTTCGAGTCTAGCAGTATTCAAGTACAGTAACTGAATGATAAAAGTGAAAATAATTCAGTAAAATAAATCACTGTTAAAGTTACAAGTGGTATAGTTGATTATGCCTGAACACTTTTAAGGTCATTATACAGTCACGGGCATGAAAAACCCATGCTAATGATGAATTATAATCCAGACTCAACATTGCATATGCTCGCAATGTGACTATTGCGAATGAGCACATTGCAATATCGATGCTGATAGGATATATTGTGACATGCATCCAAGTAAAAATTAATATTAAGAAAGAGAAACTGTTTCTATAGAAGAACTTGTTTCTATACGTTCACGTTTGGTTGGGTCTTAGTATAAGTATTGCACTCAAAAGATGAGACAGATGATTGTGAGCTTCCTGGAGCAGGGCTTTATTGAACTGAATGATTGGAGTGGTCATGCATATGTCTCGAGAGAGAGAAGTTACATGATTGAAAGGTACAGTTAGGACATTCTGATTAACAATTATAAAGTCAGAACATTTTAAAAATGAAACACAATAAGACTTATAATATTGCATTTATAAAATTGATCATTGACTGTATTTTTTATTTTTTTATTTTTTTTATGCTGACTCTTCAAGCCTGTTTGGTCTGTTTGTGGCTGAACCCGGCACAGTTTCTCCCTTGTGAAAATGAACCAAACCAAAAAAATGTTTTAATCTATTATAAATGATGAAGAGATGCACTGTAGTGATCTTAAAATAATTTAGGATTAATGTATTAATGTACATGGATTATTGTGCAAGTGTGCACGCAACTGCAAAGAAGCCGGAAGTCATTCATTTTCAATCAGAACAGACTGGTGGTGATCTCCAGCGAGAAGCATCAGAACACAGTCCTGTTTACTTTAGTTCTGAACACAGTTGTTTCCAAAGCCAAAGTAAGGAGAATCTGGGAATTGTGGTAGCTGGATTTCCAATTATTTATGACGTGTTTTTGTATTCTTACAGGGACATACATTTAAAATGTTACTGGCAAGTTACAGATGTGCATTTAGGGTTATGTTTATTCAAATAAAAAGCAGGAACCGCATGCTATCTATAACGACAGTACACAACAGTATTGCTGCTTCAGAATATTTCTGACATATAGGATAGGTGGAGCAAGGCCACACCACAGGCAACAACTTCATCTTCCATAGTTAAATCCGTTTGATGGGAGGCGCACAACATCTGACTAGACAGCATGTTTTTCTGCAAAAATGCTAGTTATTTTTCTGTTATGTTTAAATGGCTCTGAATACAAGATTAGGGAACTTCAAAAGTCTCGTCAGCAGACTCGTTATGCATTTAATAACAACTGTTATAGTGACGGTGAGTTGAAATCTTTTTGTCCTCCCTCAG
Seq C2 exon
ATTCATGGATCTCCCAATCGGCGTCTTTTCCACGTAATCAGAAGCAGCCTGGAGTGGACTCACCATCCCCTGCAGCTCCTCTACCCAAACCTCCCTGCCAGTCCTCAGGATCCCAGCAGCCACCGCGCACCATGAAAGTCACATGCGCCAACTGTAAGAAACCTTTGAAGAAAGGCCAGACTGCGTACCAGCGCAAAGGCTCATCCCACCTGTTCTGCTCAACAACCTGCCTGTCTGCCTTTTCCCATAAGCCCGCTCCCAAAAAGAGCTGCACCATGTGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=0.469
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=42.7),PF064679=zf-FCS=PU(28.3=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]