DreINT0181041 @ danRer10
Intron Retention
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40520964-40521444:+
Coord C1 exon
chr19:40520964-40521115
Coord A exon
chr19:40521116-40521329
Coord C2 exon
chr19:40521330-40521444
Length
214 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CCTGTCATTCATGGTTGCAGTAC
3' ss Score
5.18
Exon sequences
Seq C1 exon
CACGCAGCATGACACTGAAGGAGGACCTGTTGAAATGTTGCACCGCTGAGATAAGCTACGGTCTCTGTAAGTTCATCACTGAAGTCCGGCGACCCAATGGAGAGAAATACAGTCCTGACAGCATCTATTACCTCTGCTTGGGCATCCAGCAG
Seq A exon
GTAAACCAGAAGAAAAGACACAAACTGTCTAGTATCGTCTACTATTATAACAAGGAAATGGTTTTAACAAAATGCAAGCTCAGCTGACATTAATGAACACATAGACACACACTTATTTATTTATGAAAATGATTCAATCTAAAAATATAGACGCCACTACTTGCTCATGTTGTATGGTTTATTTGATTTGGTTCCCTGTCATTCATGGTTGCAG
Seq C2 exon
TACCTGTTTGAGAACAGTCGAATGGAGAACATCTTTGCAGACGTCTTCTACACTAAATTCTGCCAGGAAATGACCAACATACTCCGTGACTGGAGACCAACTGTTTTGCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823:ENSDART00000140926:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCATGACACTGAAGGAGG
R:
GGGCAAAACAGTTGGTCTCCA
Band lengths:
260-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]