DreINT0181261 @ danRer10
Intron Retention
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52463693-52465041:+
Coord C1 exon
chr7:52463693-52463850
Coord A exon
chr7:52463851-52464940
Coord C2 exon
chr7:52464941-52465041
Length
1090 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TTATCCTTTCTTTTCTTCAGCCA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTTCATGAACCACATGAAGCATCACCTGGAGTTAGAGAAGCAGAACAGCGAGAGCTGGGAGAGTCACACTACATGCCAGCACTGTTACAGACAGTATTCAACTCCTTTTCAACTGCAGTGTCACATAGAAAGTGCCCACAGTCCTTTCGAGTCCAGTA
Seq A exon
GTAAGTCACAATCATAGCTTGTAAACAGACCCCCCAAAATAGCTTCTCATTTCTTTTCAGTGTTGGAAAGTTATGTACCTACCTGGCTGCTGTCATTTGGATTATGAGCTTAATTCAATAGTAGTGCACAGTGATCATTAACAATATAGAAATACATTCCAGACTCGCACAAATCCAACTTTAAATTTGAAAACTAAATGATCATTGGATGTAGAATACAAGAAACCTAAAGAGATGCACCATGTTTTGAAAAAAAAAAAAAACAACCTTTTTTTGGTTTATTTGTTTTACTGAAAAACCCAGGTTAATGACCTATTCTGCACCTAACCAGGAAACAATCAAAATGTGTTTGCTTTTAATGTTTAGGACACGTGAGGCACATGACTTGATTATAACACTCAACTTTCTAGTCACAGGGTTCTTAAAGGGACACTTCACCCAGAAATGATGTTAATGAAATTGTTGATGAAATTCCATCCTTGATAAAAGGTGTGGAAATTAAATTCTTCTGTTGAACACACATAAAGATAAAGCAGCAAAACGAGCTGTTTTAATGTCTATAAATGAACTGAAGTGAATGAGACCAGAAGTCTCGAGCCAAAATTATTAAAATGGCTGTGCCTGCTCGTACGCAGAGAATAAGGTGAATAATAAAGCTAAAAAGGCCAACACTTCTGCCTGAAATTATGCCACACCATAATTATGACTGTGGGAGCTTTGCTATAAAAAGTAAACATAAAGTATTAGAAGTGTTAGTATTGGAAAACCAGAAAAAATTACATAACAAAATAGATAGGATAAGAGTTTTGAAAAAAATCTCACAGGACCAGAGCATTTTTTAAAATAATATAATAAAATTTGTATGGTTTGCACACTTGATGTTATATATGTTTATAACAAAGCTAAAAAGGCCAACACCTTCTGACTAAAATCATGTCACACCATAATTGCTATTGTCAAACTAGTAGGGGCTTTGCTGGAGGTCTTGAGGTGATTAAAAAAATAATCATTGGTTTAATTGGAATAAGGTTATTTAACCAGAGGTTGGTAGTTTTAGTATAAGTGTATTTTTATCCTTTCTTTTCTTCAG
Seq C2 exon
CCAACTGTAAAATATGTGAACTGGCTTTTGAGACTGAACAAGTGCTTCTGGAGCATATGAGGGACAATCACAAACCTGGAGAAATGCCCTATGGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013:ENSDART00000110906:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=PU(0.1=0.0)
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCACATGAAGCATCACCT
R:
CCATAGGGCATTTCTCCAGGT
Band lengths:
247-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]