GgaINT0028079 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:8655465-8656144:+
Coord C1 exon
chr10:8655465-8655622
Coord A exon
chr10:8655623-8656043
Coord C2 exon
chr10:8656044-8656144
Length
421 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TTGCTTTTTGCTTTTTCTAGCTA
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTATGAACCACATGAAACATCATTTAGAGCTTGAGAAGCAGAGCAGTGAAAGCTGGGAAAGCCACACCACCTGCCAGCACTGTTACCGTCAGTTTCCCACCCCATTCCAGCTGCAGTGCCACATTGAAAGTACACACACACCTTACGAGTCTTCTA
Seq A exon
GTAAGTTGGATTATATTGCACTGAACCTTTTTGTGACCTAGAATTTTAGATATTTTTTGGCTTGTCTTTTGCTGGTTATTAACTTCAGCCATTGTACTTTGAGCGCAGTAATCTGGAGGGTTGTAAGCAAAAGCTGGACAGTCATTCAGCTTCTGTCAGAGCAATGTATCTGGAAAAAGTATTTTTTTAAGTTGGAGGGTATTCTTGGAGTTTTTTTTATTGCAAACTTGATTTCAAGAGTTCATACTGTTGAAAGTCCTCACGTTCCTGAAGCTGTCAAGAGTTTCATCTGAAGAGCTCGAAGATCATTAGATTGCTTCCCCTTTATAGATTTATGCAGTTCACATGTACGTATGTATTATAATTAATTGAATTATGACCCCAAACTAATTTAAGGTTTTTTGCTTTTTGCTTTTTCTAG
Seq C2 exon
CTATTTGTAAAATCTGTGAATTATCCTTTGAAACAGAACAGGTTCTTTTGCAACATATGAAGGACAATCATAAACCAGGTGAAATGCCGTATGTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=29.9),PF139091=zf-H2C2_5=PU(12.0=3.4)
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=76.5),PF139091=zf-H2C2_5=PU(12.0=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCACATGAAACATCATTTAGA
R:
CTGGCAAACATACGGCATTTCA
Band lengths:
254-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]