RnoINT0167973 @ rn6
Intron Retention
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78900199-78901108:+
Coord C1 exon
chr8:78900199-78900356
Coord A exon
chr8:78900357-78901007
Coord C2 exon
chr8:78901008-78901108
Length
651 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TTTCTTCCTTCCATCTATAGCCA
3' ss Score
10.19
Exon sequences
Seq C1 exon
GTTTATGAACCACATGAAACACCATTTAGAGCTTGAGAAACAGAGCAGTGAGAGCTGGGAAAAGCACACCACCTGCCAGCACTGCTACAGGCAGTTCCCCACACCCTTTCAGCTGCAGTGCCACATCGAGAGCACCCACACGCCTCACGAGTTCTCCA
Seq A exon
GTGAGTTACACTGCATTGCAGGGTCTAATGAGACTGAGCAGATCTTAAGAAAACTGTTACAGAAATAAGAACAAGTAGATTTGGGGGGTAAAATTGCAAAAACTAGCTTACTCTAAGCTTCAGTTCAAATCCCAGATGTGTGTCTGGGTATAGAAGCTACATGAGCTCAGGCAGGTTATTTGGTACTGAGACTATAGGATGGCCAACATACCTTTGTGGTAGTGCTAAAAGAGGAATTGCACTGAGTTGTGTATATGTGTGACTGCTCACCACCTCTAATACTGCCACTTCTGTCTTGTTGACACTGTTAGCCAAAATGAGCCTTCATTATTTATATATTAAGATTTTGTACTGAGACTATAGGATGGCCAACATACCTTTGTGGTAGTGCTAAAAGAGGAATTGCACTGAGTTGTGTATATGTGTGACTGCTCACCACCTCTAATACTGCCACTTCTGTCTTGTTGACACTGTTAGCCAAAATGAGCCTTCATTATTTATATATTAAGATTTTGTGGGGTTGGGGATTTAGTTCAGTGGTAGAGCGCTTGCCTAGCAAGCTCAAGGCCCTGGGTTCGGTTCCCAGCTCCGAAAAAAAGAAAAGGAAAAAAAAAAAAGATTTTGTAGTAACTTTCTTCCTTCCATCTATAG
Seq C2 exon
CCATTTGTAAAATCTGTGAGCTGTCATTTGAAACTGAACAGATTCTTTTACAACATATGAAGGATAATCATAAACCTGGTGAAATGCCATACATCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631:ENSRNOT00000089335:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=PU(0.1=0.0)
A:
NA
C2:
PF139121=zf-C2H2_6=PD(92.6=73.5),PF139091=zf-H2C2_5=PU(12.0=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTATGAACCACATGAAACACCA
R:
AGATGTATGGCATTTCACCAGGT
Band lengths:
254-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]