HsaINT0186732 @ hg19
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56969772-56971019:-
Coord C1 exon
chr15:56970862-56971019
Coord A exon
chr15:56969873-56970861
Coord C2 exon
chr15:56969772-56969872
Length
989 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TGTTTCTCTCCCACATTTAGCTA
3' ss Score
8.36
Exon sequences
Seq C1 exon
GTTTATGAACCACATGAAACACCATTTGGAACTTGAGAAGCAGAGCAGTGAGAGCTGGGAAAACCATACCACCTGCCAGCACTGCTACCGTCAGTTTCCCACACCATTTCAGTTGCAGTGTCACATCGAAAGTACACATACGCCCCATGAATTTTCTA
Seq A exon
GTAAGTTACCAATACATTTAAATATTCCATATTATTGATTTCGCTAATATAAATTGTGAGAAAACCTTAAGAAGCCTGTTAGAAAAATGAGAATGAGAACTAGACTTTGGAATTTGAGGGCAAAATTGAAAGGCCAAGTTTTAACTGTGATAAACTTTTAAATAAAATTAGTTACTAATATTAAAGTGCCTCTTGCAAATAATTCAGTATGGTAATTGCCTTGACATAAACTATGCATTATATGTTGGGGACTAAATTAGGAGCCTAGTATCCTAGTTTTAAAATATTAAATCATTGCTCTTCATTTAAACTTTAATAGGAAAAAGAACTACTGTTTTAGTTAAAAATCACAGGCGGGGTGCAGTGGCTCATGCCTGTAATCCCAGTCAGCACTTTGGGAGGCCAATGTGGGCAGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAATCCCAGCTCCTTGGGAAGCTGAGGCAGGAGAATCACTTGAACCCAGGAAACGGAGGTTGCAGTAAGCCGAGATTGCGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGATACTGTCTCCAAAAAAAAAAAAAAAAAGAAAGAAAATTACAGATGTTGGAGCAAGATAGCTTGGTTTTAAATCTCAGATCTGCCTCTTAATATAGCTACAAGATTTTAGCCACGTTACTTAATACTTGAATAATGCGGATAACAGAAATACCTTTCTTATAGGGTTGTTAATAGGAGTTGAGTTAATGTAGGTGAGGTAATGTGAGTGCTTAGAACTGTTCTTTGCACATAGTTAACAAGCTGTTTAACTCTTCACAACTGTCCCTACTGCTACTGTTATTGTTGTTGATATAGATGTATAAAATTAATTTTTATATTAATATCTTAAATATTATTATACTGTTTCTCTCCCACATTTAG
Seq C2 exon
CTATTTGTAAAATCTGTGAATTGTCATTTGAAACAGAACATGTTCTTTTACAACATATGAAGGACAATCATAAACCTGGTGAAATGCCATATGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-ZNF280D:NM_001002843:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(67.9=55.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAACCACATGAAACACCATTTGG
R:
GGCAGACATATGGCATTTCACC
Band lengths:
254-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)