GgaALTA0000732-2/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8216264-8217166:-
Coord C1 exon
chr17:8217146-8217166
Coord A exon
chr17:8216544-8216561
Coord C2 exon
chr17:8216264-8216543
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGCCGGGCTTCCAGTCACAGATC
3' ss Score
0.58
Exon sequences
Seq C1 exon
CCCCATGACATCAGAGCACAG
Seq A exon
ATCTCCATCAACGTGGAG
Seq C2 exon
GACTGCGAGGACACGAAGGACGTGAAGGAGCACTGGGGCATCAAGACGGGCCACCACAGGAACTCGTGCTCCAGTGACCAATCCGAGCACCCGCTGCTGCGGCGCAAGAGCATGCAGTGGGCACGGCGGCTGAGCAGGAAGGGCAACAAGCACTCTGGCAAGACAGCCGAGTGGATCAGCCAGCAGCGGCTCAGCCTGTACCGCCGCTCCGAGCGGCAGGAGCTGTCCGAGCTCGTCAAGAACCGCATGAAGCACCTGGGTTTGCCCACCACCGGGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-33-39,33-38,33-37,33-36-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATGACATCAGAGCACAG
R:
GTGCTCGGATTGGTCACTGG
Band lengths:
111-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]