RnoALTA0020289-4/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3357729-3358806:+
Coord C1 exon
chr3:3357729-3357749
Coord A exon
chr3:3358482-3358745
Coord C2 exon
chr3:3358746-3358806
Length
264 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTGCCTGCCCAGTCTCAGATC
3' ss Score
1.34
Exon sequences
Seq C1 exon
CCTCATGACCTCAGAGCCCAG
Seq A exon
ATCTCGGTGAACATGGAGGATTGCGAGGACACTCGGGAGGCCAAGGGGCCCTGGGGCACACGGGCTGCGTCTGGCGGTGGCAGCACCCATGGCCGTCACGGGGGCAGTGCTGACCCGGTGGAGCACCCACTACTGCGCCGCAAGAGCCTGCAGTGGGCCCGCAAGCTGAGCCGCAAGAGCAGCAAGCAGGCGGGGAAGGCACCCATGACCACAGACTGGATCACCCAGCAGCGACTCAGCCTGTACCGGCGCTCAGAGCGCCAG
Seq C2 exon
GAGCTCTCGGAGCTGGTCAAGAACCGAATGAAGCACCTGGGGCTGCCCACCACTGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-36-60,36-59,36-58,36-57,36-56,36-55-4/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]