GgaALTA0001168-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr23:4693649-4694597:-
Coord C1 exon
chr23:4694552-4694597
Coord A exon
chr23:4694167-4694170
Coord C2 exon
chr23:4693649-4694166
Length
4 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CATAATTTTCTTTTCCCTAGGTA
3' ss Score
11.26
Exon sequences
Seq C1 exon
CAGTTTGAAGATAAATCTGATGCAGTATTTGATATTACAGAAAAAT
Seq A exon
GTAG
Seq C2 exon
TGAAATCCTGGATGCAGAAATGTCTGAGGACACTGTCCACAACTTACCAACTGCCCTCGACAGCGTATCTTATGAAATACAGAATCGAGCAGGATCTGAAAACTCACTGCTGGATGATGACGACGATGATGATTATTTTCTGAACTCTGGGGATTTGGCAAGCATACCTGTTGTTGGGAGTGACAACGAAGATGATCAAAATTTCACTCCGAAAGACACTCTCCCATCTGAAGACCATCTGGAAGAGGGCAAGAGGATTACAGAACACGAGCTGGACAGTGAAAAAGATATTCAGATCGAAAATGCAATCCAGAAGGATCTCACTTCACCTTTTGAGCAGGGTCCTGTATTTAAATCAATTCGAAAAGATTTTAGCATAACGAGAGATAATGGCAAAGAGACTTTTTCAACAAAGGACAAGAATAGAGAAGGAAATCTTCAAGAACATGAAAAACGGTTGGAAAAAATCCCTAAAGATACGGATTCTAGATTGAAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTGAAGATAAATCTGATGCAGT
R:
TGTCGAGGGCAGTTGGTAAGT
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]