MmuALTA0020879-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126602837-126625723:-
Coord C1 exon
chr4:126625678-126625723
Coord A exon
chr4:126603250-126603267
Coord C2 exon
chr4:126602837-126603249
Length
18 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
ACAGTTTCTTACTTTTTAAGGTG
3' ss Score
9.52
Exon sequences
Seq C1 exon
TTTGAACAGAAAAGTGATGCAGTTTTTGATGAAATTGTAGAAAACT
Seq A exon
GTGGTGTCATGGATACAG
Seq C2 exon
AAATGTCTGAAGATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTAGTAGTGACAATGAGGATGAACAGGATTGTAGTTCAAAGGACAACCTTGTTTCTTCAGTTCACACTGATGGTAGTTTGGAAGTAGAGAGAAGAGCTGCTCATCAGGAATCAGACAATGAAAATGAAATACAAATTCAAAATCAGTTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGAAAAGATTTTTGTTTAGTGAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-4-3,4-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.699
Domain overlap (PFAM):
C1:
PF047807=DUF629=FE(36.6=100)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACAGAAAAGTGATGCAGTT
R:
CATAAGACATGCTGGCAAGGGT
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: