HsaALTA1033712-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35325360-35359229:+
Coord C1 exon
chr1:35325360-35325405
Coord A exon
chr1:35358925-35358945
Coord C2 exon
chr1:35358946-35359229
Length
21 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
ACAGTATTTTACTTTTTAAGGTG
3' ss Score
8.53
Exon sequences
Seq C1 exon
TTTGAACAAAAAAGTGGTGCAGTTTTTGATGAAATTGTAGAGAACT
Seq A exon
GTGGTGGTATCATGGATACAG
Seq C2 exon
AAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGATAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-26-21,26-20,26-19-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.563 A=NA C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTGCAGTTTTTGATGAAA
R:
TCCTGTTTGATTCGGCATTCCA
Band lengths:
111-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains