GgaALTA0001168-2/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr23:4324049-4324994:-
Coord C1 exon
chr23:4324952-4324994
Coord A exon
chr23:4324567-4324570
Coord C2 exon
chr23:4324049-4324566
Length
4 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CATAATTTTCTTTTCCCTAGGTA
3' ss Score
11.26
Exon sequences
Seq C1 exon
TTTGAAGATAAATCTGATGCAGTATTTGATATTACAGAAAAAT
Seq A exon
GTAG
Seq C2 exon
TGAAATCCTGGATGCAGAAATGTCTGAGGACACTGTCCACAACTTACCAACTGCCCTCGACAGCGTATCTTATGAAATACAGAATCGAGCAGGATCTGAAAACTCACTGCTGGATGATGACGACGATGATGATTATTTTCTGAACTCTGGGGATTTGGCAAGCATACCTGTTGTTGGGAGTGACAACGAAGATGATCAAAATTTCACTCCGAAAGACACTCTCCCATCTGAAGACCATCTGGAAGAGGGCAAGAGGATTACAGAACACGAGCTGGACAGTGAAAAAGATATTCAGATCGAAAATGCAATCCAGAAGGATCTCACTTCACCTTTTGAGCAGGGTCCTGTATTTAAATCAATTCGAAAAGATTTTAGCATAACGAGAGATAATGGCAAAGAGACTTTTTCAACAAAGGACAAGAATAGAGAAGGAAATCTTCAAGAACATGAAAAACGGTTGGAAAAAATCCCTAAAGATACGGATTCTAGATTGAAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-9-6,9-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=NA C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]