GgaALTA0003049-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13010148-13013629:+
Coord C1 exon
chr8:13010148-13010386
Coord A exon
chr8:13013450-13013527
Coord C2 exon
chr8:13013528-13013629
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TGTATGTGGTTTCTTTGCAGGCT
3' ss Score
9.35
Exon sequences
Seq C1 exon
TCATCACAGGTGGCGACAGACAAGGTTGCAGGAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACTGTATCGCACACCGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCCTTACACACTACATCCTCCTCTACCACTCTGTCTACACCTGCGTTATCACCATCCTCACCAGCGCAGCTGAGTCCAGACGACCTAGAATTACTGGCTAAACTTGAGGAGCAGAACAG
Seq A exon
GCTCCTAGAAACAGATAGCAAATCCTTACGATCAGTAAATGGGTCAAGAAGAAATAGTGGATCTTCTCTTGTATCTAG
Seq C2 exon
TTCATCAGCTTCTAGCAATCTCAGCCACCTTGAAGAAGACTCGTGGATCCTGTGGGGGAGAATTGTGAATGAATGGGAAGATGTACGGAAAAAGAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935-1-8,1-7,1-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.359
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTCCATCTGCCTCCTTAC
R:
ACGAGTCTTCTTCAAGGTGGC
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]