HsaALTA1004725-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92704555-92736627:-
Coord C1 exon
chr1:92736398-92736627
Coord A exon
chr1:92704667-92704744
Coord C2 exon
chr1:92704555-92704666
Length
78 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
AGTTTTTAATTATATTTTAGATT
3' ss Score
7.56
Exon sequences
Seq C1 exon
GTGGCGACAGACAAAGTTGCAGAAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTACTTCATTACATACCACATCCTCATCTACCACACTATCAACACCAGCCCTTTCACCATCTTCCCCATCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAAGAACAGAATAG
Seq A exon
ATTGTTAGAAACGGATAGTAAGTCTTTAAGATCTGTAAATGGGTCAAGAAGAAACAGTGGCTCTTCTCTTGTGTCGAG
Seq C2 exon
TTCATCAGCCTCTAGCAACCTCAGTCACCTTGAAGAAGATTCTTGGATTCTTTGGGGAAGAATTGTTAATGAATGGGAAGATGTACGCAAAAAGAAGGAAAAGCAAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-21-73,21-72,21-71-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCAGATGGCCAGTCAGG
R:
ACTGAGGTTGCTAGAGGCTGA
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains