RnoALTA0014304-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2924636-2944301:+
Coord C1 exon
chr14:2924636-2924865
Coord A exon
chr14:2944122-2944199
Coord C2 exon
chr14:2944200-2944301
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACAGTTTTAATTCTGTTTAGATT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GTGGCGACAGACAAGGTGGCAGAAAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTCTCGCACACAGTCAGTCAGATGGCCAGCCAGGTGGCAAGTCCATCAGCCTCACTACATACCACATCCTCATCTACCACACTGTCAACACCAACACAGTCACCATCTTCCCCATCAAAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAGCTGGAGGAACAAAACAG
Seq A exon
ATTAATAGAGACAGACAGTAAGTCTTTAAGATCAGTGAATGGGTCAAGAAGAAACAGCGGCTCCTCTCTTGTTTCAAG
Seq C2 exon
TTCATCGGCCTCCAGCAACCTCAGCCACTTGGAGGAAGACTCTTGGATTCTATGGGGAAGAATTGTGAATGAGTGGGATGATGTACGCAAGAAGAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-20-18,20-17,20-16-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTCCATCAGCCTCACTAC
R:
AGTCTTCCTCCAAGTGGCTGA
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]