MmuALTA0006635-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:108250753-108266499:-
Coord C1 exon
chr5:108266440-108266499
Coord A exon
chr5:108250836-108250913
Coord C2 exon
chr5:108250753-108250835
Length
78 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ACACCTTTAATTCTGTTTAGATT
3' ss Score
7.28
Exon sequences
Seq C1 exon
ATGTGCTTTTCTTTTTCTTACTAAAAATACAAAGGCATTGGCAGAGATGAATTTAAGGAG
Seq A exon
ATTAATAGAGACAGACAGTAAGTCTTTAAGATCAGTGAATGGGTCAAGAAGAAACAGTGGTTCCTCTCTTGTATCAAG
Seq C2 exon
TTCATCAGCCTCCAGCAACCTCAGCCACCTGGAGGAAGACTCTTGGATTCTCTGGGGAAGAATTGTGAATGAATGGGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-7-11,7-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139861=DUF4224=PU(34.8=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACTAAAAATACAAAGGCATTGGC
R:
CATCATCCCATTCATTCACAATTCT
Band lengths:
127-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: