GgaALTA0003112-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000006038 | Q90998_CHICK
Description
NA
Coordinates
chr8:15131485-15133180:+
Coord C1 exon
chr8:15131485-15131674
Coord A exon
chr8:15132870-15132872
Coord C2 exon
chr8:15132873-15133180
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AACTTTTTTTCTACCTTTAGAAG
3' ss Score
7.81
Exon sequences
Seq C1 exon
ACATCAAATAGTATTGGTTTTGGAAAGGAAACAGAACGATCCATGACTATGAGTAAATCAGTAATACCTGATATTCCTTCATCACATGAGAGTTTGATCAAGTGGGCATATGAGCATAAATATAGTCCAGTTACTTCCTATACAAAAGCCCCCGTAGCTAACAGATTTCATCTGCAACTTGAACATACAG
Seq A exon
AAG
Seq C2 exon
AGATGAATGATGAAGAAGACCATTCTCTTCCTCCAGAGCTTACAGAATTGCTGCATGGTGCAAAGAATCCTGCATTAAGTGATGGCCTGACTTTTCCTTTTCACATTAATAGAGGAGGACATGAAACAGGGGGAGAAGGAATTTTCCCATCCAGGGATTCAGTGGACACATTAATTAATCATGACTTTGAGCATTCCCTCTCAAAACACAAAGAACCTGAAGAAGTTCAAGGCAGTGCTGATGTAGCCCTGTCAATAAAGTGTGATGACAAAGTCATGACAGTGGCTGTAGAAAAAGACTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006038-8-12,8-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010018=Zona_pellucida=PU(5.8=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCCCGTAGCTAACAGATT
R:
GCACCATGCAGCAATTCTGTA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]