HsaALTA0008602-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000069702 | TGFBR3
Description
transforming growth factor, beta receptor III [Source:HGNC Symbol;Acc:11774]
Coordinates
chr1:92185450-92187701:-
Coord C1 exon
chr1:92187512-92187701
Coord A exon
NA
Coord C2 exon
chr1:92185450-92185784
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTTCTTCTTTCACCAGCAGAGG
3' ss Score
7.7
Exon sequences
Seq C1 exon
GCTCCTAACAGTATTGGCTTTGGAAAAGAGAGTGAAAGATCTATGACAATGACCAAATCAATAAGAGATGACATTCCTTCAACCCAAGGGAATCTGGTGAAGTGGGCTTTGGACAATGGCTATAGTCCAATAACTTCATACACAATGGCTCCTGTGGCTAATAGATTTCATCTTCGGCTTGAAAATAATG
Seq A exon
NA
Seq C2 exon
AGGAGATGGGAGATGAGGAAGTCCACACTATTCCTCCTGAGCTACGGATCCTGCTGGACCCTGGTGCCCTGCCTGCCCTGCAGAACCCGCCCATCCGGGGAGGGGAAGGCCAAAATGGAGGCCTTCCGTTTCCTTTCCCAGATATTTCCAGGAGAGTCTGGAATGAAGAGGGAGAAGATGGGCTCCCTCGGCCAAAGGACCCTGTCATTCCCAGCATACAACTGTTTCCTGGTCTCAGAGAGCCAGAAGAGGTGCAAGGGAGCGTGGATATTGCCCTGTCTGTCAAATGTGACAATGAGAAGATGATCGTGGCTGTAGAAAAAGATTCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000069702-16-19,16-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010018=Zona_pellucida=PU(5.9=14.3)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACACAATGGCTCCTGTGGC
R:
GGATCCGTAGCTCAGGAGGAA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)