RnoALTA0040500-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002093 | Tgfbr3
Description
transforming growth factor beta receptor 3 [Source:RGD Symbol;Acc:61821]
Coordinates
chr14:3646218-3648611:+
Coord C1 exon
chr14:3646218-3646407
Coord A exon
NA
Coord C2 exon
chr14:3648280-3648611
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
CTTGCCTTCCCTTTCCACAGAGG
3' ss Score
11.31
Exon sequences
Seq C1 exon
GCTCCCAACAGTATCGGCTTTGGAAAAGAGAGTGAACGATCCATGACAATGACCAAATTGGTAAGAGATGACATCCCTTCCACCCAAGAGAATCTGATGAAGTGGGCACTGGACAATGGCTACAGGCCAGTGACGTCATACACAATGGCTCCCGTGGCTAATAGATTTCATCTTCGGCTTGAGAACAACG
Seq A exon
NA
Seq C2 exon
AGGAGATGAGAGATGAGGAAGTCCACACCATTCCTCCTGAGCTTCGTATCCTGCTGGACCCTGACCACCCGCCCGCCCTGGACAACCCACTCTTCCCAGGAGAGGGAAGCCCAAATGGTGGTCTCCCCTTTCCATTCCCGGATATCCCCAGGAGAGGCTGGAAGGAGGGCGAAGATAGGATCCCCCGGCCAAAGCAGCCCATCGTTCCCAGTGTTCAACTGCTTCCTGACCACCGAGAACCAGAAGAAGTGCAAGGGGGCGTGGACATCGCCCTGTCAGTCAAATGTGACCATGAAAAGATGGTCGTGGCTGTAGACAAAGACTCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002093-20-16,20-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.820
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010018=Zona_pellucida=PU(5.9=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATCCCTTCCACCCAAGA
R:
CCTATCTTCGCCCTCCTTCCA
Band lengths:
301-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]