MmuALTA1019769-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029287 | Tgfbr3
Description
transforming growth factor, beta receptor III [Source:MGI Symbol;Acc:MGI:104637]
Coordinates
chr5:107140384-107142546:-
Coord C1 exon
chr5:107142357-107142546
Coord A exon
chr5:107140711-107140712
Coord C2 exon
chr5:107140384-107140710
Length
2 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
GCTTGCCCTGTCTTTCCCAGAGG
3' ss Score
9.28
Exon sequences
Seq C1 exon
GCTCCTGACAGTATTGGCTTTGGAAAAGAGAGTGAACGATCCATGACAGTGACCAAATTGGTAAGAAATGACATCCCTTCCACCCAAGAGAATCTGATGAAGTGGGCATTGGACAATGGCTACAGCCCAGTGACGTCATACACCATAGCTCCTGTGGCCAATAGATTTCATCTTCGGCTTGAGAACAACG
Seq A exon
AG
Seq C2 exon
GAGATGAGAGATGAGGAAGTCCACACCATTCCTCCTGAGCTTCGGATCCTGCTGGGCCCTGACCACCTGCCTGCCCTGGACAGCCCATCCTTCCAAGGGGAAATCCCAAATGGAGGTTTCCCCTTCCCATTCCCGGATATCCCCAGGAGAGGCTGGAAGGAGGGAGAAGATAGGATCCCCCGGCCAAAGGAACCCATCATTCCCAGAGTTCAATTGCTTCCAGACCACAGAGAGCCAGAAGAAGTGCAAGGGGGCGTGAATATCGCCCTGTCAGTCAAATGTGACAATGAAAAGATGGTGGTAGCTGTAGACAAAGATTCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029287-25-19,25-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.518
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010018=Zona_pellucida=PU(5.9=14.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCAGTGACGTCATACAC
R:
TCAGGAGGAATGGTGTGGACT
Band lengths:
106-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types