GgaALTA0003112-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006038 | TGFBR3
Description
transforming growth factor beta receptor type 3 precursor [Source:RefSeq peptide;Acc:NP_989670]
Coordinates
chr8:13374682-13376377:+
Coord C1 exon
chr8:13374682-13374871
Coord A exon
chr8:13376067-13376181
Coord C2 exon
chr8:13376182-13376377
Length
115 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AACTTTTTTTCTACCTTTAGAAG
3' ss Score
7.81
Exon sequences
Seq C1 exon
ACATCAAATAGTATTGGTTTTGGAAAGGAAACAGAACGATCCATGACTATGAGTAAATCAGTAATACCTGATATTCCTTCATCACATGAGAGTTTGATCAAGTGGGCATATGAGCATAAATATAGTCCAGTTACTTCCTATACAAAAGCCCCCGTAGCTAACAGATTTCATCTGCAACTTGAACATACAG
Seq A exon
AAGAGATGAATGATGAAGAAGACCATTCTCTTCCTCCAGAGCTTACAGAATTGCTGCATGGTGCAAAGAATCCTGCATTAAGTGATGGCCTGACTTTTCCTTTTCACATTAATAG
Seq C2 exon
AGGAGGACATGAAACAGGGGGAGAAGGAATTTTCCCATCCAGGGATTCAGTGGACACATTAATTAATCATGACTTTGAGCATTCCCTCTCAAAACACAAAGAACCTGAAGAAGTTCAAGGCAGTGCTGATGTAGCCCTGTCAATAAAGTGTGATGACAAAGTCATGACAGTGGCTGTAGAAAAAGACTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006038-23-24,23-23,23-22,23-21-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010018=Zona_pellucida=PU(5.8=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGCCCCCGTAGCTAAC
R:
GCAGAGAGTCTTTTTCTACAGCCA
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]