GgaALTA0006597-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012561 | PKP4
Description
plakophilin-4 [Source:RefSeq peptide;Acc:NP_001006529]
Coordinates
chr7:35913380-35915342:+
Coord C1 exon
chr7:35913380-35913571
Coord A exon
chr7:35915126-35915228
Coord C2 exon
chr7:35915229-35915342
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TAATACTAATTTTATACTAGGAG
3' ss Score
4.41
Exon sequences
Seq C1 exon
GCCTGAGGAGTTCGTATGCTAGTCAACACAGTCAACTAGGACAGGAATTACGATCAGCTGTATCTCCTGACTTGCACATCACCCCTATCTATGAAGGCAGAACTTACTACAGTCCTGTGTACCGTAGCCCAAATCATGGAACGATTGAGCTCCACCAGGGGTCCCAGTCAGCACTATATCGAACAGGGTCAG
Seq A exon
GAGTTGGAAATCTGCAAAGATCATCCAGTCAGCGTAGCACACTCACATACCAAAGAAATAATTATGCTCTGAACACAACTGCTACCTATGCGGAACCCTACAG
Seq C2 exon
GTCAATGCAGTACCGACTGTCAGAGTCTGGCTATAACAGGCTGCAGCACACAGCGCCCGCTGATGATGGGACCACGCGATCTCCATCCATAGATAGCATCCAAAAGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-20-29,20-28,20-27-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.726 A=NA C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(9.8=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGGAGTTCGTATGCTA
R:
TGTGCTGCAGCCTGTTATAGC
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]