MmuALTA0013388-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59148159-59149970:+
Coord C1 exon
chr2:59148159-59148347
Coord A exon
NA
Coord C2 exon
chr2:59149754-59149970
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AAACGTTGATTTTGCAGTAGGTA
3' ss Score
1.82
Exon sequences
Seq C1 exon
GCTTACGGAGTTCCTATGCCAGTCAGCATAGTCAGCTTGGGCAAGAGCTCCGTTCAGCTGTGTCTCCTGACTTGCACATCACTCCTATCTATGAAGGGAGGACCTACTACAGTCCAGTGTACCGCAGCCCAAACCACGGGACCGTGGAGCTCCAGGGGTCACAGACAGCATTGTATCGCACAGGCTCAG
Seq A exon
NA
Seq C2 exon
GTATTGGAAATCTACAAAGGACATCCAGCCAGCGAAGCACCCTTACATACCAAAGAAATAACTATGCCCTGAACACAGCAGCTACCTATGCGGAGCCCTACAGGCCAGTTCAGTACCGAGTCCAAGAGTGCAGCTATAACAGGCTGCAGCACACAGGGCCAGCTGATGACGGTGCCACAAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991-22-24,22-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=NA C2=0.496
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(9.8=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTGTATCGCACAGGCTC
R:
GCTGCTGTGTTCAGGGCATAG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: