GgaALTA1000973-1/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4783221-4783729:+
Coord C1 exon
chr17:4783221-4783286
Coord A exon
NA
Coord C2 exon
chr17:4783561-4783729
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
GTGCCTCCTTTTCACTCCAGGGT
3' ss Score
9.22
Exon sequences
Seq C1 exon
CAACAAGATGGCTTTGGGGCTGCTTTCCGGACACTGGTTGACTCCAACGTGGCACTCAAGACAGAG
Seq A exon
NA
Seq C2 exon
GGTTACCAACATCCAGACCTTCTCATGCTGGACCATGGAGGGGAGATCTTTAAGACTCTACACTACCTCAGCAACCTCATTCAGAGCATCAAGAGACCCCTGGGCACCAAGGAAAACCCTGCACGCATCTGCCGAGACCTCATGAACTGTGAACAGAAGATGAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-75-64,75-63-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.2=9.1)
A:
NA
C2:
PF0141013=COLFI=PU(40.3=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGATGGCTTTGGGGCTG
R:
CATCCTTCATCTTCTGTTCACAGT
Band lengths:
234-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]