GgaALTA1001322-2/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr7:18117412-18118463:-
Coord C1 exon
chr7:18118379-18118463
Coord A exon
chr7:18117529-18117548
Coord C2 exon
chr7:18117412-18117528
Length
20 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
TCTTTTCTTTTTCTGTCAAGCGT
3' ss Score
6.27
Exon sequences
Seq C1 exon
CAATCTATCGAATTCCCAGTCAACATATCAGAGAAGGCTGCTGGTGACCAGATCTGGAAGGAAAATAAAAGGAAGAGGACCAAGG
Seq A exon
CGTTACCGGACTCCTTCCAG
Seq C2 exon
ATCCAGGTCAAGAGATCGATTCCGACGCAGTGAAACTCCTCCACATTGGAGGCAAGAAATGCAAAGAGCTCAAAGAATGAGAGTGTCTAGTGGAGAAAGATGGATAAAAGGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839-26-20,26-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGAGAAGGCTGCTGGTGA
R:
GTGGAGGAGTTTCACTGCGTC
Band lengths:
103-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]