HsaALTA1029393-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169633160-169636162:+
Coord C1 exon
chr2:169633160-169633247
Coord A exon
chr2:169636092-169636111
Coord C2 exon
chr2:169636112-169636162
Length
20 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
CCTATTTTAATTTTCTTTAGCGT
3' ss Score
7.9
Exon sequences
Seq C1 exon
TAATCCACCTAACTCCCAGCCTGCTTCATACCAGAGACGACTTTTAGTTACTAGATCTGGCAGGAAAATTAAAGGAAGAGGACCAAGG
Seq A exon
CGTTATCGAACTCCTTCCAG
Seq C2 exon
ATCCAGATCAAGGGATCGTTTCAGACGTAGTGAGACTCCTCCACATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-46-55,46-54-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF095075=CDC27=PD(4.2=18.4)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTTCATACCAGAGACG
R:
TGTGGAGGAGTCTCACTACGT
Band lengths:
115-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains