MmuALTA0013862-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69743613-69749097:+
Coord C1 exon
chr2:69743613-69743780
Coord A exon
chr2:69748961-69748980
Coord C2 exon
chr2:69748981-69749097
Length
20 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CCCCTTTTTATTTTCTTAAGCGT
3' ss Score
7.32
Exon sequences
Seq C1 exon
CCCATCTAGTGAAAGTGAAGCAGAAAATGTTGATGCACAGCCCCAGTCTACTGTCCGTCCAGAAGAGATCCCTCCTATACCAGAAAATAGATTTCTAATGAGAAAAAGTCCTCCTAAAGCCGATGACAAGGAGAGGAAAAACAGAGAGAGAGAAAGAGAAAGAGAGTG
Seq A exon
CGTTATCGAACTCCTTCCAG
Seq C2 exon
ATCCAGATCGAGGGATCGATTCAGACGAAGTGAGACTCCTCCACATTGGAGACAAGAGATGCAGAGAGCTCAGAGAATGAGGGTGTCAAGTGGTGAAAGATGGATCAAAGGGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-25-38,25-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCGATGACAAGGAGAGGA
R:
TCCAATGTGGAGGAGTCTCACT
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types