RnoALTA0030468-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55983127-55986361:+
Coord C1 exon
chr3:55983127-55983214
Coord A exon
chr3:55986225-55986244
Coord C2 exon
chr3:55986245-55986361
Length
20 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
CCCCTTTTTATTTTCTTAAGCGT
3' ss Score
7.32
Exon sequences
Seq C1 exon
TAACCCACCTAACTCCCAGCCTGCCTCATACCAGCGACGATTCTTAGTTACTAGGTCTGGCAGGAAGATTAAAGGAAGAGGACCAAGG
Seq A exon
CGTTATCGAACTCCTTCCAG
Seq C2 exon
ATCCAGATCGAGGGATCGATTCAGACGAAGTGAGACTCCTCCACATTGGAGACAAGAGATGCAGAGAGCTCAGAGAATGAGGGTGTCAAGTGGTGAAAGATGGATCAAAGGGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673-19-25,19-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATACCAGCGACGATTC
R:
TGTGGAGGAGTCTCACTTCGT
Band lengths:
111-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]