GgaALTA1002927-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13575810-13576769:-
Coord C1 exon
chr14:13576671-13576769
Coord A exon
chr14:13575942-13576002
Coord C2 exon
chr14:13575810-13575941
Length
61 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTCCTCCATCCTGGCGCAGGGT
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTGAGGCCCTATTCACAGAGCTGGAGCTGAAGCGGGAGGAGCTGGGCATCGCCAGCTATGGGGCCTCAGTCACCACCATGGAGGAAGTCTTCCTGAG
Seq A exon
GGTTGGGAAGCTGGTGGACTCCAGCATGGACATCCAGGCCATCCAGCTGCCTGCTCTGCAG
Seq C2 exon
TACCAGCACGAACGGCGCTCCAACGACTGGGCCATGGACGACTCCAGCAGCCTGAGTGGGATGACAGACATGACAGATGACAGCGGGGCACTCATTACAGAGGACTGCTCCAGCATCAAGCTCAACACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-21-26,21-25,21-24-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCACCACCATGGAGGA
R:
TCCTCTGTAATGAGTGCCCCG
Band lengths:
137-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]