MmuALTA1011902-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24392888-24396636:+
Coord C1 exon
chr17:24392888-24392986
Coord A exon
chr17:24396450-24396510
Coord C2 exon
chr17:24396511-24396636
Length
61 bp
Sequences
Splice sites
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
3' ss Seq
GGGCCTGTGTTCTGGTACAGGGT
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTTTGAAAGTCTGTTTGCTAAACTGGAAAAGAAGCAGAAGGAGTTGGGCATCGCAAGCTTCGGGGCCTCGGTCACCACCATGGAGGAAGTCTTCCTTCG
Seq A exon
GGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATTCAGCTTCCTGCTCTGCAG
Seq C2 exon
TACCAGCATGAGAGGCGGGCAAGCGACTGGGCTTTGGACAGTAACCTGTGTGGGGTGATGGACCCAACGAATGGCATTGGAGCCCTCATAGAGGAAGAGGAAGTTTTGGTCAAGCTCAACACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-34-51,34-50-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.7=100)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGAAGGAGTTGGGCATC
R:
ATGCCATTCGTTGGGTCCATC
Band lengths:
145-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types