GgaALTD0004663-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51791666-51802783:+
Coord C1 exon
chr4:51791666-51791818
Coord A exon
chr4:51791819-51791845
Coord C2 exon
chr4:51802707-51802783
Length
27 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TATTGGCATTGTTCTTACAGGCA
3' ss Score
7.99
Exon sequences
Seq C1 exon
AAATGATTGTCGACAATCAGATTGAGACAGGGCTCTTGAAGGCAGACATGAAGGACAAAGTCACCTACACGCTGCTCAGGAAGCACCGGCACCAGACCAAGAAGTCCAACCTGCGCTCTCTGGCAGACATTGGAAAGACCGTCTCCAGTGCAA
Seq A exon
GTAGGATGTTTACCAACCCCGATAATG
Seq C2 exon
GCAGTCCAGCCATGACTCACAGAAATCTGACTTCCACCAGTCTGAATGACATCTCTGACAAGCCTGAGAAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-9-7,10-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.744
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTCACCTACACGCTGCT
R:
TCTGTGAGTCATGGCTGGACT
Band lengths:
121-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]