MmuALTD0013102-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89475238-89513743:+
Coord C1 exon
chr5:89475238-89475390
Coord A exon
chr5:89475391-89475417
Coord C2 exon
chr5:89513667-89513743
Length
27 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
GTTCACTTATGTTTTTCCAGGCA
3' ss Score
8.02
Exon sequences
Seq C1 exon
AGATGATTGCAGACCACCAGATCGAGACAGGCCTACTGAAGCCTGACCTGAAGGATAAGGTCACCTATACTCTGCTCCGGAAACATCGACATCAAACCAAGAAATCCAACCTTCGGTCCCTGGCTGACATTGGGAAGACTGTCTCCAGTGCAA
Seq A exon
GTAGGATGTTTAGCAACCCTGATAATG
Seq C2 exon
GCAGCCCAGCCATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGAGAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-9-12,10-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=NA C2=0.853
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(21.0=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(10.3=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTCCGGAAACATCGAC
R:
CAGATTCCTGTGGGTCATGGC
Band lengths:
113-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: