RnoALTD0028150-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20619252-20655494:-
Coord C1 exon
chr14:20655342-20655494
Coord A exon
chr14:20655315-20655341
Coord C2 exon
chr14:20619252-20619328
Length
27 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
3' ss Seq
GTTCCCTTGTGTTTTTCCAGGTA
3' ss Score
11.36
Exon sequences
Seq C1 exon
AGATGATTGCAGACCACCAGATCGAGACAGGCCTCTTGAAGCCCGACCTCAAGGATAAGGTCACCTATACGCTGCTGCGGAAACACCGACATCAAACCAAGAAATCCAACCTTCGGTCCCTGGCTGACATTGGGAAGACAGTCTCCAGTGCAA
Seq A exon
GTAGGATGTTCAGCAACCCTGATAACG
Seq C2 exon
GTAGCCCAGCTATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGAGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-21-19,22-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.249 A=NA C2=0.827
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACCTATACGCTGCTGC
R:
CTGTGGGTCATAGCTGGGCTA
Band lengths:
117-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]